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ACD49_19

Alias: ACD49_23124.77765.22

Search features with annotation key words

Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD49_19_1
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(1..399)
DNA (399bp) protein (133aa)
general secretion pathway protein G; K02456 general secretion pathway protein G (db=KEGG evalue=2.0e-08 bit_score=61.2 identity=30.09 coverage=79.6992481203008)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
Pili subunits (db=superfamily db_id=SSF54523 from=13 to=122 evalue=6.8e-16)
no description (db=Gene3D db_id=G3DSA:3.30.700.10 from=12 to=130 evalue=0.00016)
ACD49_19_2
unknown

Not on your lists

570..1676
DNA (1107bp) protein (369aa)
dnaJ; chaperone protein DnaJ
Chaperone protein DnaJ n=1 Tax=Filifactor alocis ATCC 35896 RepID=D6GR88_9FIRM (db=UNIREF evalue=6.0e-53 bit_score=211.0 identity=38.2 coverage=94.3089430894309)
seg (db=Seg db_id=seg from=150 to=162)
seg (db=Seg db_id=seg from=313 to=327)
ACD49_19_3
ACD49, Gracilibacteria, Bacteria

Not on your lists

1687..1914
DNA (228bp) protein (76aa)
1687..1914 + (rbs_motif=TTTTA rbs_spacer=11bp)
hypothetical protein Tax=ACD49
ACD49_19_4

Not on your lists


1988..2971
DNA (984bp) protein (328aa)
Protein recA n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K3C4_DESAC (db=UNIREF evalue=2.0e-115 bit_score=419.0 identity=64.42 coverage=97.8658536585366)
recA; protein RecA
recA; protein RecA
seg (db=Seg db_id=seg from=244 to=252)
ACD49_19_5
ACD49, Gracilibacteria, Bacteria

Not on your lists


3130..5286
DNA (2157bp) protein (719aa)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Thermincola sp. JR RepID=D5XF21_9FIRM (db=UNIREF evalue=1.0e-151 bit_score=541.0 identity=40.99 coverage=96.6620305980529)
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
polynuc_phos: polyribonucleotide nucleot (db=HMMTigr db_id=TIGR03591 from=21 to=717 evalue=2.9e-215 interpro_id=IPR012162 interpro_description=Polyribonucleotide nucleotidyltransferase GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: polyribonucleotide nucleotidyltransferase activity (GO:0004654), Cellular Component: mitochondrion (GO:0005739), Biological Process: mRNA catabolic process (GO:0006402))
ACD49_19_6

Not on your lists

5298..5978
DNA (681bp) protein (227aa)
Uracil-DNA glycosylase n=1 Tax=Pedobacter sp. BAL39 RepID=A6ECZ4_9SPHI (db=UNIREF evalue=1.0e-71 bit_score=272.0 identity=60.0 coverage=96.0352422907489)
uracil-DNA glycosylase (EC:3.2.2.-)
U_DNA_GLYCOSYLASE (db=PatternScan db_id=PS00130 from=62 to=71 evalue=0.0 interpro_id=IPR018085 interpro_description=Uracil-DNA glycosylase, active site GO=Biological Process: DNA repair (GO:0006281), Molecular Function: hydrolase activity, hydrolyzing N-glycosyl compounds (GO:0016799))
ung: uracil-DNA glycosylase (db=HMMTigr db_id=TIGR00628 from=9 to=219 evalue=4.4e-108 interpro_id=IPR002043 interpro_description=Uracil-DNA glycosylase GO=Molecular Function: uracil DNA N-glycosylase activity (GO:0004844), Biological Process: base-excision repair (GO:0006284))
ACD49_19_7
ACD49, Gracilibacteria, Bacteria

Not on your lists

6043..6411
DNA (369bp) protein (123aa)
seg (db=Seg db_id=seg from=94 to=106)
seg 94..106 Tax=ACD49
ACD49_19_8
unknown

Not on your lists

6413..7597
DNA (1185bp) protein (395aa)
predicted DNA methylase n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI000174294B (db=UNIREF evalue=5.0e-19 bit_score=99.4 identity=29.6 coverage=75.1898734177215)
predicted DNA methylase (db=KEGG evalue=9.0e-15 bit_score=85.1 identity=26.21 coverage=89.1139240506329)
UPF0020 (db=HMMPfam db_id=PF01170 from=186 to=256 evalue=6.7e-14 interpro_id=IPR000241 interpro_description=Putative RNA methylase)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=106 to=246 evalue=2.4e-13)
ACD49_19_9
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(7663..8019)
DNA (357bp) protein (119aa)
7663..8019 - (rbs_motif=TTTTA rbs_spacer=11bp)
hypothetical protein Tax=ACD49
ACD49_19_10
ACD49, Gracilibacteria, Bacteria

Not on your lists

8177..8734
DNA (558bp) protein (186aa)
LemA family protein
seg (db=Seg db_id=seg from=5 to=19)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
coiled-coil (db=Coil db_id=coil from=110 to=131 evalue=NA)
ACD49_19_11
ACD49, Gracilibacteria, Bacteria

Not on your lists

8738..9718
DNA (981bp) protein (327aa)
protease
transmembrane_regions (db=TMHMM db_id=tmhmm from=218 to=240)
transmembrane_regions (db=TMHMM db_id=tmhmm from=177 to=198)
transmembrane_regions (db=TMHMM db_id=tmhmm from=63 to=85)
ACD49_19_12
ACD49, Gracilibacteria, Bacteria

Not on your lists

9835..10536
DNA (702bp) protein (234aa)
hypothetical protein; K09761 ribosomal RNA small subunit methyltransferase E [EC:2.1.1.-] (db=KEGG evalue=1.0e-21 bit_score=106.0 identity=33.06 coverage=97.008547008547)
Methyltrans_RNA (db=HMMPfam db_id=PF04452 from=16 to=225 evalue=5.2e-36 interpro_id=IPR006700 interpro_description=Ribosomal RNA small subunit methyltransferase E GO=Biological Process: rRNA processing (GO:0006364), Molecular Function: methyltransferase activity (GO:0008168))
TIGR00046: RNA methyltransferase, RsmE fami (db=HMMTigr db_id=TIGR00046 from=1 to=222 evalue=5.2e-23 interpro_id=IPR006700 interpro_description=Ribosomal RNA small subunit methyltransferase E GO=Biological Process: rRNA processing (GO:0006364), Molecular Function: methyltransferase activity (GO:0008168))
alpha/beta knot (db=superfamily db_id=SSF75217 from=71 to=231 evalue=5.3e-22)
ACD49_19_13
ACD49, Gracilibacteria, Bacteria

Not on your lists

10604..12949
DNA (2346bp) protein (782aa)
seg (db=Seg db_id=seg from=19 to=37)
seg (db=Seg db_id=seg from=455 to=475)
seg (db=Seg db_id=seg from=539 to=556)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
ACD49_19_14
ACD49, Gracilibacteria, Bacteria

Not on your lists

13160..14398
DNA (1239bp) protein (413aa)
ftsA; cell division protein FtsA
seg (db=Seg db_id=seg from=30 to=44)
ftsA: cell division protein FtsA (db=HMMTigr db_id=TIGR01174 from=6 to=378 evalue=1.2e-81 interpro_id=IPR020823 interpro_description=Cell division protein family FtsA GO=Biological Process: cell cycle (GO:0007049))
no description (db=HMMSmart db_id=SM00842 from=7 to=193 evalue=2.1e-40 interpro_id=IPR003494 interpro_description=Cell division protein FtsA domain GO=Biological Process: cell cycle (GO:0007049))
ACD49_19_15
ACD49, Gracilibacteria, Bacteria

Not on your lists

14466..15671
DNA (1206bp) protein (402aa)
ftsZ1; Cell division protein FtsZ
ftsZ1; Cell division protein FtsZ
Cell division protein ftsZ n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8W1S0_9BACI (db=UNIREF evalue=5.0e-95 bit_score=351.0 identity=56.01 coverage=90.0497512437811)
seg (db=Seg db_id=seg from=101 to=114)
ACD49_19_16
ACD49, Gracilibacteria, Bacteria

Not on your lists

15789..15938
DNA (150bp) protein (50aa)
15789..15938 + (rbs_motif=TTTTA rbs_spacer=11bp)
hypothetical protein Tax=ACD49
ACD49_19_17
ACD49, Gracilibacteria, Bacteria

Not on your lists

16037..16621
DNA (585bp) protein (195aa)
16037..16621 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD49
ACD49_19_18
ACD49, Gracilibacteria, Bacteria

Not on your lists

16770..17684
DNA (915bp) protein (305aa)
seg (db=Seg db_id=seg from=112 to=123)
seg (db=Seg db_id=seg from=52 to=63)
seg (db=Seg db_id=seg from=13 to=25)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=28 evalue=5.0)
ACD49_19_19
ACD49, Gracilibacteria, Bacteria

Not on your lists

17792..18016
DNA (225bp) protein (75aa)
UPF0150 (db=HMMPfam db_id=PF03681 from=10 to=52 evalue=1.0e-07 interpro_id=IPR005357 interpro_description=Uncharacterised protein family UPF0150)
TTHA1013-like (db=superfamily db_id=SSF143100 from=6 to=72 evalue=4.3e-07)
UPF0150 Tax=ACD49
ACD49_19_20
unknown

Not on your lists

18009..18230
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EYX3_9FIRM (db=UNIREF evalue=5.0e-10 bit_score=66.6 identity=52.54 coverage=78.3783783783784)
YcfA (db=HMMPfam db_id=PF07927 from=10 to=65 evalue=3.2e-10 interpro_id=IPR012933 interpro_description=YcfA-like)
YcfA/nrd intein domain (db=superfamily db_id=SSF54786 from=3 to=73 evalue=3.9e-08 interpro_id=IPR015146 interpro_description=Ribonucleotide reductase, stirrup)
no description (db=Gene3D db_id=G3DSA:3.30.920.30 from=3 to=73 evalue=2.7e-07)
ACD49_19_21

Not on your lists

18246..20387
DNA (2142bp) protein (714aa)
NAD-dependent DNA ligase
NAD-dependent DNA ligase
DNA ligase, NAD-dependent n=2 Tax=Leptotrichia RepID=C7NA81_LEPBD (db=UNIREF evalue=6.0e-124 bit_score=448.0 identity=37.92 coverage=91.8767507002801)
seg (db=Seg db_id=seg from=178 to=189)
ACD49_19_22
unknown

Not on your lists

20453..23428
DNA (2976bp) protein (992aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS42_9BACT (db=UNIREF evalue=7.0e-99 bit_score=366.0 identity=40.68 coverage=45.2620967741936)
seg (db=Seg db_id=seg from=53 to=70)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=64)
ACD49_19_23
ACD49, Gracilibacteria, Bacteria

Not on your lists

23498..24451
DNA (954bp) protein (318aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=283 to=305)
transmembrane_regions (db=TMHMM db_id=tmhmm from=249 to=271)
transmembrane_regions (db=TMHMM db_id=tmhmm from=190 to=212)
transmembrane_regions (db=TMHMM db_id=tmhmm from=148 to=170)
ACD49_19_24
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(24448..25659)
DNA (1212bp) protein (404aa)
polA; DNA polymerase I
seg (db=Seg db_id=seg from=297 to=317)
no description (db=HMMSmart db_id=SM00475 from=1 to=259 evalue=5.3e-75 interpro_id=IPR002421 interpro_description=5'-3' exonuclease, N-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: 5'-3' exonuclease activity (GO:0008409))
no description (db=Gene3D db_id=G3DSA:3.40.50.1010 from=2 to=204 evalue=1.2e-53)
ACD49_19_25
unknown

Not on your lists

comp(25669..26097)
DNA (429bp) protein (143aa)
Possible dUTP diphosphatase n=1 Tax=Oribacterium sinus F0268 RepID=C2L131_9FIRM (db=UNIREF evalue=1.0e-20 bit_score=102.0 identity=31.91 coverage=96.5034965034965)
yncF; dUTP pyrophosphatase (EC:3.6.1.23)
dUTPase-like (db=superfamily db_id=SSF51283 from=1 to=142 evalue=4.2e-26)
DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE (db=HMMPanther db_id=PTHR11241 from=3 to=142 evalue=2.6e-24)
ACD49_19_26
unknown

Not on your lists

comp(26109..26807)
DNA (699bp) protein (233aa)
Thymidylate kinase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6K1_9FIRM (db=UNIREF evalue=7.0e-24 bit_score=114.0 identity=33.91 coverage=90.9871244635193)
thymidylate kinase; K00943 dTMP kinase [EC:2.7.4.9] (db=KEGG evalue=2.0e-23 bit_score=112.0 identity=30.47 coverage=96.5665236051502)
seg (db=Seg db_id=seg from=152 to=161)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=5 to=215 evalue=2.1e-22)
ACD49_19_27
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(26807..26974)
DNA (168bp) protein (56aa)
26807..26974 - (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=ACD49
ACD49_19_28

Not on your lists

comp(27016..28710)
DNA (1695bp) protein (565aa)
alternative thymidylate synthase-like
seg (db=Seg db_id=seg from=177 to=191)
Thy1 (db=HMMPfam db_id=PF02511 from=109 to=290 evalue=9.5e-12 interpro_id=IPR003669 interpro_description=Thymidylate synthase ThyX GO=Biological Process: dTMP biosynthetic process (GO:0006231), Molecular Function: FAD binding (GO:0050660), Molecular Function: thymidylate synthase (FAD) activity (GO:0050797))
Thymidylate synthase-complementing protein Thy1 (db=superfamily db_id=SSF69796 from=72 to=296 evalue=2.0e-09 interpro_id=IPR003669 interpro_description=Thymidylate synthase ThyX GO=Biological Process: dTMP biosynthetic process (GO:0006231), Molecular Function: FAD binding (GO:0050660), Molecular Function: thymidylate synthase (FAD) activity (GO:0050797))
ACD49_19_29
ACD49, Gracilibacteria, Bacteria

Not on your lists

comp(28797..29339)
DNA (543bp) protein (181aa)
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13)
no description (db=Gene3D db_id=G3DSA:2.70.40.10 from=1 to=163 evalue=2.8e-30)
dUTPase-like (db=superfamily db_id=SSF51283 from=1 to=159 evalue=5.9e-28)
dCTP_deam: deoxycytidine triphosphate deami (db=HMMTigr db_id=TIGR02274 from=2 to=180 evalue=2.4e-21 interpro_id=IPR011962 interpro_description=Deoxycytidine triphosphate deaminase GO=Molecular Function: protein binding (GO:0005515), Biological Process: dUTP biosynthetic process (GO:0006229), Molecular Function: dCTP deaminase activity (GO:0008829))
ACD49_19_30
ACD49, Gracilibacteria, Bacteria

Not on your lists

29513..30202
DNA (690bp) protein (230aa)
seg (db=Seg db_id=seg from=141 to=152)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg 141..152 Tax=ACD49
Displaying items 1-30 of 67 in total

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