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ACD49_31

Alias: ACD78_134935.2967.8

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD49_31_1
ACD49, Gracilibacteria, Bacteria

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109..321
DNA (213bp) protein (71aa)
109..321 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD49
ACD49_31_2
ACD49, Gracilibacteria, Bacteria

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506..1699
DNA (1194bp) protein (398aa)
elongation factor Tu
elongation factor Tu
Elongation factor Tu n=1 Tax=Colwellia psychrerythraea 34H RepID=EFTU_COLP3 (db=UNIREF evalue=5.0e-168 bit_score=594.0 identity=74.11 coverage=97.4874371859297)
seg (db=Seg db_id=seg from=137 to=151)
ACD49_31_3
ACD49, Gracilibacteria, Bacteria

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1794..2114
DNA (321bp) protein (107aa)
rpsJ; 30S ribosomal protein S10
rpsJ_bact: ribosomal protein S10 (db=HMMTigr db_id=TIGR01049 from=7 to=105 evalue=1.3e-45 interpro_id=IPR005731 interpro_description=Ribosomal protein S10 subgroup GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER (db=HMMPanther db_id=PTHR11700 from=9 to=105 evalue=3.0e-40 interpro_id=IPR001848 interpro_description=Ribosomal protein S10 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S10 (db=HMMPanther db_id=PTHR11700:SF2 from=9 to=105 evalue=3.0e-40 interpro_id=IPR005731 interpro_description=Ribosomal protein S10 subgroup GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD49_31_4
ACD49, Gracilibacteria, Bacteria

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2146..2343
DNA (198bp) protein (66aa)
50S ribosomal protein L28
Ribosomal_L28 (db=HMMPfam db_id=PF00830 from=3 to=63 evalue=2.9e-22 interpro_id=IPR001383 interpro_description=Ribosomal protein L28 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L28: ribosomal protein L28 (db=HMMTigr db_id=TIGR00009 from=1 to=58 evalue=1.8e-20 interpro_id=IPR001383 interpro_description=Ribosomal protein L28 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L28p-like (db=superfamily db_id=SSF143800 from=1 to=65 evalue=3.9e-20)
ACD49_31_5
ACD49, Gracilibacteria, Bacteria

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2482..2712
DNA (231bp) protein (77aa)
30S ribosomal protein S16P (db=KEGG evalue=6.0e-09 bit_score=62.8 identity=41.1 coverage=93.5064935064935)
RIBOSOMAL_S16 (db=PatternScan db_id=PS00732 from=2 to=11 evalue=0.0 interpro_id=IPR020592 interpro_description=Ribosomal protein S16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S16 (db=superfamily db_id=SSF54565 from=1 to=75 evalue=2.9e-14 interpro_id=IPR000307 interpro_description=Ribosomal protein S16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S16 (db=HMMPanther db_id=PTHR12919 from=1 to=74 evalue=2.5e-12 interpro_id=IPR000307 interpro_description=Ribosomal protein S16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD49_31_6
unknown

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2740..2979
DNA (240bp) protein (80aa)
RNA-binding protein
RNA-binding protein (Contains KH domain)-like protein (Fragment) n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSZ2_9BACT (db=UNIREF evalue=1.0e-10 bit_score=68.6 identity=47.83 coverage=85.0)
Prokaryotic type KH domain (KH-domain type II) (db=superfamily db_id=SSF54814 from=4 to=63 evalue=2.5e-06 interpro_id=IPR009019 interpro_description=K Homology, prokaryotic type GO=Molecular Function: RNA binding (GO:0003723))
KH_1 (db=HMMPfam db_id=PF00013 from=35 to=60 evalue=1.1e-05 interpro_id=IPR018111 interpro_description=K Homology, type 1, subgroup GO=Molecular Function: RNA binding (GO:0003723))
Displaying 6 items

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