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ACD50_38

Alias: ACD50_246809.22764.8

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD50_38_1
unknown

Not on your lists

comp(3..68)
DNA (66bp) protein (22aa)
3..68 - (rbs_motif=TAA rbs_spacer=3bp)
ACD50_38_2
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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99..536
DNA (438bp) protein (146aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=118 to=140)
transmembrane_regions (db=TMHMM db_id=tmhmm from=83 to=105)
seg (db=Seg db_id=seg from=80 to=119)
seg (db=Seg db_id=seg from=16 to=32)
ACD50_38_3
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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comp(574..1347)
DNA (774bp) protein (258aa)
phosphotransferase domain-containing protein
PHP domain-like (db=superfamily db_id=SSF89550 from=10 to=191 evalue=2.2e-25 interpro_id=IPR016195 interpro_description=Polymerase/histidinol phosphatase-like GO=Molecular Function: catalytic activity (GO:0003824))
PHP (db=HMMPfam db_id=PF02811 from=16 to=140 evalue=4.5e-09 interpro_id=IPR004013 interpro_description=PHP, C-terminal GO=Molecular Function: catalytic activity (GO:0003824))
no description (db=HMMSmart db_id=SM00481 from=15 to=84 evalue=6.4e-06 interpro_id=IPR003141 interpro_description=Polymerase/histidinol phosphatase, N-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260))
ACD50_38_4

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1424..1858
DNA (435bp) protein (145aa)
hypothetical protein
seg (db=Seg db_id=seg from=100 to=111)
AF0104/ALDC/Ptd012-like (db=superfamily db_id=SSF117856 from=1 to=138 evalue=3.3e-31)
DUF296 (db=HMMPfam db_id=PF03479 from=11 to=125 evalue=8.5e-27 interpro_id=IPR005175 interpro_description=Protein of unknown function DUF296)
ACD50_38_5

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1862..2512
DNA (651bp) protein (217aa)
glpG; membrane associated serine protease
transmembrane_regions (db=TMHMM db_id=tmhmm from=189 to=211)
transmembrane_regions (db=TMHMM db_id=tmhmm from=152 to=174)
transmembrane_regions (db=TMHMM db_id=tmhmm from=123 to=145)
ACD50_38_6
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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comp(2544..3956)
DNA (1413bp) protein (471aa)
hypothetical protein
seg (db=Seg db_id=seg from=6 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
Cupredoxins (db=superfamily db_id=SSF49503 from=7 to=117 evalue=9.4e-14 interpro_id=IPR008972 interpro_description=Cupredoxin)
ACD50_38_7
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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comp(3960..5078)
DNA (1119bp) protein (373aa)
hypothetical protein (db=KEGG evalue=9.0e-26 bit_score=121.0 identity=26.06 coverage=81.769436997319)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=6 to=25)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
ACD50_38_8
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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comp(5274..5606)
DNA (333bp) protein (111aa)
hypothetical protein (db=KEGG evalue=2.0e-18 bit_score=94.4 identity=45.45 coverage=87.3873873873874)
hypothetical protein alias=ACD50_C00038G00008,ACD50_246809.22764.8G0008,ACD50_246809.22764.8_8 id=71682 tax=ACD50 species=Brachyspira murdochii genus=Brachyspira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes organism_group=OP11 organism_desc=OP11
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
ACD50_38_9
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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comp(5603..5941)
DNA (339bp) protein (113aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MKK8_9BACT (db=UNIREF evalue=3.0e-21 bit_score=104.0 identity=53.85 coverage=79.646017699115)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
ACD50_38_10
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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comp(6123..6758)
DNA (636bp) protein (212aa)
6123..6758 - (rbs_motif=TAA rbs_spacer=10bp)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
ACD50_38_11
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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6881..7435
DNA (555bp) protein (185aa)
hypothetical protein
hypothetical protein BlinB_13531 n=1 Tax=Brevibacterium linens BL2 RepID=UPI00005100C1 (db=UNIREF evalue=2.0e-34 bit_score=148.0 identity=43.58 coverage=92.972972972973)
seg (db=Seg db_id=seg from=69 to=83)
PG0164-like (db=superfamily db_id=SSF141694 from=2 to=91 evalue=3.8e-11)
ACD50_38_12
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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7448..7768
DNA (321bp) protein (107aa)
3-demethylubiquinone-9 3-methyltransferase
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NRD1_ROSCS (db=UNIREF evalue=6.0e-27 bit_score=122.0 identity=64.89 coverage=85.981308411215)
3-dmu-9_3-mt (db=HMMPfam db_id=PF06983 from=2 to=96 evalue=8.8e-28)
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (db=superfamily db_id=SSF54593 from=1 to=95 evalue=4.3e-23)
ACD50_38_13

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7708..7926
DNA (219bp) protein (73aa)
3-demethylubiquinone-9 3-methyltransferase
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J6N8_9BACL (db=UNIREF evalue=6.0e-21 bit_score=102.0 identity=68.75 coverage=86.3013698630137)
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (db=superfamily db_id=SSF54593 from=12 to=70 evalue=1.9e-18)
3-dmu-9_3-mt (db=HMMPfam db_id=PF06983 from=12 to=31 evalue=7.4e-08)
ACD50_38_14

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7928..8530
DNA (603bp) protein (201aa)
hypothetical protein
Dihydrofolate reductase-like (db=superfamily db_id=SSF53597 from=2 to=190 evalue=1.6e-29)
RibD_C (db=HMMPfam db_id=PF01872 from=2 to=183 evalue=3.5e-24 interpro_id=IPR002734 interpro_description=Bacterial bifunctional deaminase-reductase, C-terminal GO=Molecular Function: 5-amino-6-(5-phosphoribosylamino)uracil reductase activity (GO:0008703), Biological Process: riboflavin biosynthetic process (GO:0009231))
no description (db=Gene3D db_id=G3DSA:3.40.430.10 from=2 to=195 evalue=3.9e-18)
ACD50_38_15

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8535..8930
DNA (396bp) protein (132aa)
hypothetical protein
DUF1428 (db=HMMPfam db_id=PF07237 from=7 to=117 evalue=1.9e-31 interpro_id=IPR009874 interpro_description=Protein of unknown function DUF1428)
protein of unknown function DUF1428 alias=ACD50_C00038G00015,ACD50_246809.22764.8G0015,ACD50_246809.22764.8_15 id=71665 tax=ACD50 species=Methanosphaerula palustris genus=Methanosphaerula taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota organism_group=OP11 organism_desc=OP11
Uncharacterized protein {ECO:0000313|EMBL:EKD65218.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD50_38_16
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(9049..9714)
DNA (666bp) protein (222aa)
seg (db=Seg db_id=seg from=37 to=48)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=53)
seg 37..48 Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
ACD50_38_17
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(9816..10781)
DNA (966bp) protein (322aa)
obgE; GTPase ObgE
seg (db=Seg db_id=seg from=31 to=42)
GTP1_OBG (db=PatternScan db_id=PS00905 from=206 to=219 evalue=0.0 interpro_id=IPR006074 interpro_description=GTP1/OBG, conserved site GO=Molecular Function: GTP binding (GO:0005525))
Obg_CgtA: Obg family GTPase CgtA (db=HMMTigr db_id=TIGR02729 from=2 to=320 evalue=7.8e-148 interpro_id=IPR014100 interpro_description=GTP-binding protein Obg/CgtA)
ACD50_38_18
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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10818..11690
DNA (873bp) protein (291aa)
SAM dependent methyltransferase
transmembrane_regions (db=TMHMM db_id=tmhmm from=126 to=148)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=12 to=262 evalue=7.5e-44)
Methyltrans_SAM (db=HMMPfam db_id=PF10672 from=115 to=230 evalue=8.3e-10 interpro_id=IPR019614 interpro_description=S-adenosylmethionine-dependent methyltransferase)
ACD50_38_19

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comp(11724..12926)
DNA (1203bp) protein (401aa)
ATPase, AAA family n=1 Tax=Geobacter sulfurreducens RepID=Q74BH4_GEOSL (db=UNIREF evalue=3.0e-120 bit_score=435.0 identity=53.13 coverage=99.002493765586)
AAA ATPase central domain protein
AAA ATPase central domain protein
HOLLIDAY JUNCTION DNA HELICASE RUVB-RELATED (db=HMMPanther db_id=PTHR13779 from=11 to=400 evalue=7.6e-188)
ACD50_38_20

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comp(12986..13579)
DNA (594bp) protein (198aa)
seg (db=Seg db_id=seg from=64 to=76)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=31 evalue=5.0)
Uncharacterized protein {ECO:0000313|EMBL:EKD65223.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD50_38_21

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comp(13634..15463)
DNA (1830bp) protein (610aa)
hypothetical protein
hypothetical protein
GTP-binding protein TypA n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B2547 (db=UNIREF evalue=4.0e-176 bit_score=622.0 identity=56.13 coverage=98.6885245901639)
seg (db=Seg db_id=seg from=116 to=140)
ACD50_38_22

Not on your lists

15587..16828
DNA (1242bp) protein (414aa)
DNA polymerase IV
seg (db=Seg db_id=seg from=149 to=161)
DNA POLYMERASE IV / KAPPA (db=HMMPanther db_id=PTHR11076:SF12 from=9 to=385 evalue=8.0e-81)
DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER (db=HMMPanther db_id=PTHR11076 from=9 to=385 evalue=8.0e-81 interpro_id=IPR001126 interpro_description=DNA-repair protein, UmuC-like GO=Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA repair (GO:0006281))
ACD50_38_23

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comp(16833..17642)
DNA (810bp) protein (270aa)
ATP-cone domain-containing protein
Restriction endonuclease-like (db=superfamily db_id=SSF52980 from=85 to=211 evalue=1.2e-23 interpro_id=IPR011335 interpro_description=Restriction endonuclease, type II-like GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:3.40.91.40 from=93 to=211 evalue=7.2e-17 interpro_id=IPR012311 interpro_description=Nuclease, putative, AF1548, N-terminal)
Mrr_cat (db=HMMPfam db_id=PF04471 from=94 to=192 evalue=7.3e-09 interpro_id=IPR007560 interpro_description=Restriction endonuclease, type IV-like, Mrr GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: endonuclease activity (GO:0004519), Biological Process: DNA restriction-modification system (GO:0009307))
ACD50_38_24
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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comp(17684..19132)
DNA (1449bp) protein (483aa)
putative membrane protein (DUF2079)
Membrane protein-like protein n=1 Tax=Geobacter sp. M18 RepID=C6MUP4_9DELT (db=UNIREF evalue=1.0e-26 bit_score=124.0 identity=27.43 coverage=91.0973084886128)
transmembrane_regions (db=TMHMM db_id=tmhmm from=356 to=378)
transmembrane_regions (db=TMHMM db_id=tmhmm from=321 to=343)
ACD50_38_25
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(19267..20835)
DNA (1569bp) protein (523aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=489 to=507)
seg (db=Seg db_id=seg from=403 to=459)
seg (db=Seg db_id=seg from=314 to=329)
seg (db=Seg db_id=seg from=276 to=304)
ACD50_38_26
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(21662..22798)
DNA (1137bp) protein (379aa)
seg (db=Seg db_id=seg from=348 to=378)
seg (db=Seg db_id=seg from=295 to=307)
seg (db=Seg db_id=seg from=278 to=288)
seg (db=Seg db_id=seg from=221 to=234)
Displaying 26 items

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