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ACD50_45

Alias: ACD50_1769.4624.39

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD50_45_1

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comp(3..167)
DNA (165bp) protein (55aa)
3..167 - (rbs_motif=TAA rbs_spacer=12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD65480.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD50_45_2

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292..510
DNA (219bp) protein (73aa)
protein encoded in hypervariable junctions of pilus gene clusters
HicB family protein n=1 Tax=Pelodictyon phaeoclathratiforme BU-1 RepID=B4SAL0_PELPB (db=UNIREF evalue=7.0e-11 bit_score=69.3 identity=43.08 coverage=87.6712328767123)
HicB family protein {ECO:0000313|EMBL:EKD65481.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD50_45_3

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618..956
DNA (339bp) protein (113aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=61 to=83)
DUF1044 (db=HMMPfam db_id=PF06296 from=45 to=107 evalue=9.3e-09)
Uncharacterized protein {ECO:0000313|EMBL:EKD65482.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD50_45_4

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956..1237
DNA (282bp) protein (94aa)
hypothetical protein
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=34 to=88 evalue=8.7e-06 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
HTH_3 (db=HMMPfam db_id=PF01381 from=35 to=76 evalue=3.6e-05 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
HTH_CROC1 (db=ProfileScan db_id=PS50943 from=34 to=83 evalue=9.395 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
ACD50_45_5

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comp(1571..2179)
DNA (609bp) protein (203aa)
seg (db=Seg db_id=seg from=74 to=82)
Uncharacterized protein {ECO:0000313|EMBL:EKD65484.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD50_45_6

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2620..2925
DNA (306bp) protein (102aa)
DUF3018 (db=HMMPfam db_id=PF11455 from=17 to=54 evalue=1.8e-05 interpro_id=IPR021558 interpro_description=Protein of unknown function DUF3018)
Uncharacterized protein {ECO:0000313|EMBL:EKD65485.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD50_45_7

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3071..3277
DNA (207bp) protein (69aa)
3071..3277 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD65486.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD50_45_8

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3274..4377
DNA (1104bp) protein (368aa)
plasmid encoded RepA protein
seg (db=Seg db_id=seg from=321 to=332)
seg (db=Seg db_id=seg from=280 to=295)
seg (db=Seg db_id=seg from=34 to=54)
Plasmid replication Jill Banfield (11/15/12)
Displaying 8 items

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