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ACD50_47

Alias: ACD50_23800.8309.9

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD50_47_1
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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comp(3..476)
DNA (474bp) protein (158aa)
hypothetical protein
seg (db=Seg db_id=seg from=6 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
Transgly (db=HMMPfam db_id=PF00912 from=75 to=157 evalue=3.4e-22 interpro_id=IPR001264 interpro_description=Glycosyl transferase, family 51 GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: peptidoglycan biosynthetic process (GO:0009252), Cellular Component: peptidoglycan-based cell wall (GO:0009274))
ACD50_47_2
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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531..1766
DNA (1236bp) protein (412aa)
hypothetical protein
hypothetical protein
Tyrosyl-tRNA synthetase n=1 Tax=Bacillus clausii KSM-K16 RepID=SYY_BACSK (db=UNIREF evalue=1.0e-79 bit_score=300.0 identity=39.76 coverage=95.631067961165)
seg (db=Seg db_id=seg from=319 to=329)
ACD50_47_3
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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1916..3928
DNA (2013bp) protein (671aa)
hypothetical protein
hypothetical protein
ATP-dependent DNA helicase n=3 Tax=Dehalococcoides RepID=D2BIL8_DEHSV (db=UNIREF evalue=1.0e-152 bit_score=543.0 identity=44.26 coverage=94.3368107302533)
seg (db=Seg db_id=seg from=496 to=511)
ACD50_47_4
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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3965..4180
DNA (216bp) protein (72aa)
50S ribosomal protein L32
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
Ribosomal_L32p (db=HMMPfam db_id=PF01783 from=5 to=56 evalue=2.1e-21 interpro_id=IPR002677 interpro_description=Ribosomal protein L32p GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
rpmF_bact: ribosomal protein L32 (db=HMMTigr db_id=TIGR01031 from=5 to=57 evalue=1.1e-20 interpro_id=IPR002677 interpro_description=Ribosomal protein L32p GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
ACD50_47_5
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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4177..4527
DNA (351bp) protein (117aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z6M6_9FIRM (db=UNIREF evalue=1.0e-12 bit_score=75.1 identity=56.67 coverage=50.4273504273504)
seg (db=Seg db_id=seg from=39 to=51)
NusB (db=HMMPfam db_id=PF01029 from=22 to=111 evalue=4.4e-26 interpro_id=IPR006027 interpro_description=NusB/RsmB/TIM44 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD50_47_6
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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4532..5194
DNA (663bp) protein (221aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0M9W6_9FIRM (db=UNIREF evalue=1.0e-46 bit_score=189.0 identity=46.45 coverage=93.6651583710407)
RNASE_3_1 (db=PatternScan db_id=PS00517 from=34 to=42 evalue=0.0 interpro_id=IPR000999 interpro_description=Ribonuclease III GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease III activity (GO:0004525), Biological Process: RNA processing (GO:0006396))
RNaseIII: ribonuclease III (db=HMMTigr db_id=TIGR02191 from=1 to=218 evalue=3.9e-92 interpro_id=IPR011907 interpro_description=Ribonuclease III, bacterial GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease III activity (GO:0004525), Biological Process: rRNA catabolic process (GO:0016075))
ACD50_47_7
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists


5238..5465
DNA (228bp) protein (76aa)
rpsP; 30S ribosomal protein S16
30S ribosomal protein S16 n=1 Tax=Rhodococcus equi ATCC 33707 RepID=D5PN42_COREQ (db=UNIREF evalue=5.0e-12 bit_score=73.2 identity=49.33 coverage=97.3684210526316)
30S RIBOSOMAL PROTEIN S16 (db=HMMPanther db_id=PTHR12919 from=2 to=75 evalue=9.2e-18 interpro_id=IPR000307 interpro_description=Ribosomal protein S16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
S16: ribosomal protein S16 (db=HMMTigr db_id=TIGR00002 from=3 to=75 evalue=3.7e-17 interpro_id=IPR000307 interpro_description=Ribosomal protein S16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD50_47_8

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5477..5716
DNA (240bp) protein (80aa)
hypothetical protein
Prokaryotic type KH domain (KH-domain type II) (db=superfamily db_id=SSF54814 from=3 to=70 evalue=2.9e-06 interpro_id=IPR009019 interpro_description=K Homology, prokaryotic type GO=Molecular Function: RNA binding (GO:0003723))
KH_1 (db=HMMPfam db_id=PF00013 from=33 to=58 evalue=7.0e-06 interpro_id=IPR018111 interpro_description=K Homology, type 1, subgroup GO=Molecular Function: RNA binding (GO:0003723))
KH_TYPE_1 (db=ProfileScan db_id=PS50084 from=29 to=79 evalue=9.687 interpro_id=IPR004088 interpro_description=K Homology, type 1 GO=Molecular Function: RNA binding (GO:0003723))
ACD50_47_9

Not on your lists

5726..6403
DNA (678bp) protein (226aa)
tRNA (guanine-N(1)-)-methyltransferase
seg (db=Seg db_id=seg from=151 to=163)
tRNA-(m1G37) methyltransferase (db=HMMPIR db_id=PIRSF000386 from=1 to=225 evalue=3.8e-110 interpro_id=IPR002649 interpro_description=tRNA (guanine-N1-)-methyltransferase, bacteria GO=Molecular Function: RNA binding (GO:0003723), Biological Process: tRNA processing (GO:0008033), Molecular Function: tRNA (guanine-N1-)-methyltransferase activity (GO:0009019))
trmD: tRNA (guanine-N1)-methyltransferase (db=HMMTigr db_id=TIGR00088 from=1 to=221 evalue=2.4e-102 interpro_id=IPR002649 interpro_description=tRNA (guanine-N1-)-methyltransferase, bacteria GO=Molecular Function: RNA binding (GO:0003723), Biological Process: tRNA processing (GO:0008033), Molecular Function: tRNA (guanine-N1-)-methyltransferase activity (GO:0009019))
ACD50_47_10
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(6387..7115)
DNA (729bp) protein (243aa)
seg (db=Seg db_id=seg from=220 to=235)
seg (db=Seg db_id=seg from=105 to=117)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
transmembrane_regions 20..42 Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
ACD50_47_11
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(7117..7647)
DNA (531bp) protein (177aa)
seg (db=Seg db_id=seg from=30 to=54)
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=46)
PilN (db=HMMPfam db_id=PF05137 from=14 to=141 evalue=1.5e-07 interpro_id=IPR007813 interpro_description=Fimbrial assembly)
seg 30..54 Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
ACD50_47_12
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(7640..8347)
DNA (708bp) protein (236aa)
hypothetical protein
type IV pilus assembly protein PilM n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B2645 (db=UNIREF evalue=8.0e-18 bit_score=94.0 identity=27.73 coverage=97.8813559322034)
Actin-like ATPase domain (db=superfamily db_id=SSF53067 from=65 to=232 evalue=2.0e-14)
pilM; Type IV pilus assembly protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
Displaying 12 items

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