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ACD50_68

Alias: ACD50_94856.14174.8

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD50_68_1
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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1..774
DNA (774bp) protein (258aa)
hemolysin-type calcium-binding protein
Putative uncharacterized protein n=2 Tax=Arthrospira platensis RepID=D5A1X2_SPIPL (db=UNIREF evalue=4.0e-14 bit_score=82.0 identity=53.66 coverage=31.3953488372093)
seg (db=Seg db_id=seg from=212 to=227)
seg (db=Seg db_id=seg from=168 to=202)
ACD50_68_2
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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795..947
DNA (153bp) protein (51aa)
795..947 + (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
ACD50_68_3

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917..1117
DNA (201bp) protein (67aa)
917..1117 + (rbs_motif=TAA rbs_spacer=4bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD64477.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD50_68_4
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

1176..1772
DNA (597bp) protein (199aa)
seg (db=Seg db_id=seg from=69 to=81)
seg (db=Seg db_id=seg from=91 to=102)
seg (db=Seg db_id=seg from=180 to=193)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
ACD50_68_5
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

1808..2083
DNA (276bp) protein (92aa)
1808..2083 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
ACD50_68_6
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

2088..2462
DNA (375bp) protein (125aa)
response regulator receiver
Response regulator receiver n=1 Tax=Pedobacter sp. BAL39 RepID=A6E8D4_9SPHI (db=UNIREF evalue=9.0e-20 bit_score=99.0 identity=41.88 coverage=91.2)
CheY-like (db=superfamily db_id=SSF52172 from=5 to=124 evalue=1.8e-28 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=HMMSmart db_id=SM00448 from=8 to=120 evalue=9.0e-26 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD50_68_7
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

2459..3994
DNA (1536bp) protein (512aa)
serine phosphatase RsbU, regulator of sigma subunit
Sensor protein n=2 Tax=Sphingobacterium spiritivorum RepID=C5PU28_9SPHI (db=UNIREF evalue=2.0e-48 bit_score=197.0 identity=42.31 coverage=44.921875)
transmembrane_regions (db=TMHMM db_id=tmhmm from=206 to=223)
transmembrane_regions (db=TMHMM db_id=tmhmm from=180 to=199)
ACD50_68_8
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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comp(4292..4954)
DNA (663bp) protein (221aa)
two component transcriptional regulator, winged helix family
no description (db=HMMSmart db_id=SM00448 from=2 to=113 evalue=2.7e-36 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
CheY-like (db=superfamily db_id=SSF52172 from=1 to=185 evalue=4.8e-36 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=3 to=118 evalue=1.7e-32)
ACD50_68_9

Not on your lists

comp(4978..6633)
DNA (1656bp) protein (552aa)
Oxidoreductase
coiled-coil (db=Coil db_id=coil from=353 to=374 evalue=NA)
D-LACTATE DEHYDROGENASE (db=HMMPanther db_id=PTHR11748 from=8 to=532 evalue=1.4e-73)
OXIDOREDUCTASE (db=HMMPanther db_id=PTHR11748:SF4 from=8 to=532 evalue=1.4e-73)
ACD50_68_10
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(6748..7764)
DNA (1017bp) protein (339aa)
Transketolase, central region n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KTL2_9BACT (db=UNIREF evalue=5.0e-84 bit_score=315.0 identity=48.23 coverage=90.8554572271386)
transketolase
transketolase
seg (db=Seg db_id=seg from=314 to=329)
ACD50_68_11
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(7773..8666)
DNA (894bp) protein (298aa)
Transketolase domain protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KTL1_9BACT (db=UNIREF evalue=1.0e-100 bit_score=369.0 identity=63.08 coverage=91.6107382550336)
Transketolase protein
seg (db=Seg db_id=seg from=3 to=16)
ACD50_68_12
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(8797..9732)
DNA (936bp) protein (312aa)
8797..9732 - (rbs_motif=ATAA rbs_spacer=4bp)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
ACD50_68_13
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(9752..11026)
DNA (1275bp) protein (425aa)
glycerate 2-kinase (EC:1.1.1.81)
seg (db=Seg db_id=seg from=67 to=77)
seg (db=Seg db_id=seg from=325 to=334)
GckA/TtuD-like (db=superfamily db_id=SSF82544 from=11 to=424 evalue=9.1e-103)
ACD50_68_14

Not on your lists

comp(11029..11472)
DNA (444bp) protein (148aa)
ribose 5-phosphate isomerase
Sugar-phosphate isomerase, RpiB/LacA/LacB types (db=HMMPIR db_id=PIRSF005384 from=1 to=147 evalue=1.7e-55 interpro_id=IPR003500 interpro_description=Ribose/galactose isomerase GO=Biological Process: carbohydrate metabolic process (GO:0005975))
rpiB_lacA_lacB: sugar-phosphate isomer (db=HMMTigr db_id=TIGR00689 from=3 to=147 evalue=1.4e-50 interpro_id=IPR003500 interpro_description=Ribose/galactose isomerase GO=Biological Process: carbohydrate metabolic process (GO:0005975))
Ribose/Galactose isomerase RpiB/AlsB (db=superfamily db_id=SSF89623 from=1 to=147 evalue=1.3e-48 interpro_id=IPR003500 interpro_description=Ribose/galactose isomerase GO=Biological Process: carbohydrate metabolic process (GO:0005975))
ACD50_68_15
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(11477..12298)
DNA (822bp) protein (274aa)
hypothetical protein
seg (db=Seg db_id=seg from=22 to=34)
seg (db=Seg db_id=seg from=44 to=56)
DUF2090 (db=HMMPfam db_id=PF09863 from=8 to=267 evalue=1.3e-35 interpro_id=IPR018659 interpro_description=Protein of unknown function DUF2090)
ACD50_68_16
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(12291..13274)
DNA (984bp) protein (328aa)
hypothetical protein
Putative sugar kinase n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVB3_9BACT (db=UNIREF evalue=1.0e-42 bit_score=177.0 identity=35.69 coverage=94.8170731707317)
seg (db=Seg db_id=seg from=220 to=233)
coiled-coil (db=Coil db_id=coil from=199 to=234 evalue=NA)
ACD50_68_17
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

13366..13875
DNA (510bp) protein (170aa)
Putative nickel-containing superoxide dismutase n=1 Tax=Polaribacter irgensii 23-P RepID=A4C131_9FLAO (db=UNIREF evalue=3.0e-36 bit_score=153.0 identity=47.17 coverage=89.4117647058824)
nickel-dependent superoxide dismutase
coiled-coil (db=Coil db_id=coil from=119 to=140 evalue=NA)
sodN: superoxide dismutase, Ni (db=HMMTigr db_id=TIGR02753 from=1 to=149 evalue=5.9e-54 interpro_id=IPR014123 interpro_description=Superoxide dismutase, Nickel-type GO=Molecular Function: superoxide dismutase activity (GO:0004784), Molecular Function: nickel ion binding (GO:0016151), Molecular Function: antioxidant activity (GO:0016209))
ACD50_68_18
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

13876..14160
DNA (285bp) protein (95aa)
seg (db=Seg db_id=seg from=37 to=53)
SPASE_I_3 (db=PatternScan db_id=PS00761 from=63 to=76 evalue=0.0 interpro_id=IPR019758 interpro_description=Peptidase S26A, signal peptidase I, conserved site GO=Molecular Function: serine-type peptidase activity (GO:0008236), Cellular Component: integral to membrane (GO:0016021))
SPASE_I_1 (db=PatternScan db_id=PS00501 from=11 to=18 evalue=0.0 interpro_id=IPR019756 interpro_description=Peptidase S26A, signal peptidase I, serine active site GO=Molecular Function: serine-type peptidase activity (GO:0008236), Cellular Component: integral to membrane (GO:0016021))
LexA/Signal peptidase (db=superfamily db_id=SSF51306 from=2 to=93 evalue=8.5e-22 interpro_id=IPR015927 interpro_description=Peptidase S24/S26A/S26B/S26C)
Displaying 18 items

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