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ACD50_101

Alias: ACD50_35540.10471.9

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD50_101_1
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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3..182
DNA (180bp) protein (60aa)
seg (db=Seg db_id=seg from=2 to=14)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=57)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
K+dependent Na+ exchanger related-protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
ACD50_101_2
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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comp(262..1989)
DNA (1728bp) protein (576aa)
cytochrome c biogenesis protein, transmembrane region
cytochrome c biogenesis protein, transmembrane region
Redoxin domain protein n=1 Tax=Burkholderia phytofirmans PsJN RepID=B2TDY5_BURPP (db=UNIREF evalue=1.0e-83 bit_score=314.0 identity=36.4 coverage=86.6319444444444)
seg (db=Seg db_id=seg from=45 to=63)
ACD50_101_3
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(1993..2490)
DNA (498bp) protein (166aa)
Putative uncharacterized protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AGX1_9ACTN (db=UNIREF evalue=4.0e-10 bit_score=67.0 identity=38.71 coverage=50.0)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
seg (db=Seg db_id=seg from=5 to=25)
seg (db=Seg db_id=seg from=39 to=53)
ACD50_101_4
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

2607..3788
DNA (1182bp) protein (394aa)
major facilitator superfamily protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
transmembrane_regions (db=TMHMM db_id=tmhmm from=128 to=150)
transmembrane_regions (db=TMHMM db_id=tmhmm from=209 to=231)
ACD50_101_5
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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3846..5060
DNA (1215bp) protein (405aa)
group 1 glycosyl transferase
seg (db=Seg db_id=seg from=203 to=215)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=29 to=375 evalue=4.6e-49)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526:SF7 from=2 to=376 evalue=5.1e-45)
ACD50_101_6
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(5023..5424)
DNA (402bp) protein (134aa)
Nudix (db=superfamily db_id=SSF55811 from=2 to=132 evalue=3.9e-08 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
NUDIX (db=HMMPfam db_id=PF00293 from=9 to=121 evalue=1.0e-07 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
Nudix 2..132 Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
ACD50_101_7

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5529..6320
DNA (792bp) protein (264aa)
inositol monophosphatase family protein
seg (db=Seg db_id=seg from=138 to=150)
IMP_2 (db=PatternScan db_id=PS00630 from=214 to=228 evalue=0.0 interpro_id=IPR020550 interpro_description=Inositol monophosphatase, conserved site GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437))
Carbohydrate phosphatase (db=superfamily db_id=SSF56655 from=2 to=261 evalue=7.8e-48)
ACD50_101_8
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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comp(6357..6461)
DNA (105bp) protein (35aa)
6357..6461 - (rbs_motif=ATAAT rbs_spacer=7bp)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
ACD50_101_9
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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comp(6501..6983)
DNA (483bp) protein (161aa)
6501..6983 - (rbs_motif=ATA rbs_spacer=8bp)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
ACD50_101_10
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(6994..7392)
DNA (399bp) protein (133aa)
Methylmalonyl-CoA epimerase n=1 Tax=Polysphondylium pallidum PN500 RepID=D3B4P2_POLPA (db=UNIREF evalue=4.0e-13 bit_score=77.0 identity=33.59 coverage=93.984962406015)
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (db=superfamily db_id=SSF54593 from=1 to=131 evalue=9.3e-30)
Glyoxalase (db=HMMPfam db_id=PF00903 from=6 to=129 evalue=5.6e-21 interpro_id=IPR004360 interpro_description=Glyoxalase/bleomycin resistance protein/dioxygenase)
ACD50_101_11
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(7389..7841)
DNA (453bp) protein (151aa)
pyridoxamine 5'-phosphate oxidase-related FMN-binding (db=KEGG evalue=4.0e-10 bit_score=67.0 identity=28.67 coverage=90.0662251655629)
FMN-binding split barrel (db=superfamily db_id=SSF50475 from=1 to=139 evalue=7.3e-17 interpro_id=IPR009002 interpro_description=FMN-binding split barrel, related)
Pyridox_oxidase (db=HMMPfam db_id=PF01243 from=4 to=90 evalue=3.6e-09 interpro_id=IPR011576 interpro_description=Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO=Molecular Function: FMN binding (GO:0010181))
pyridoxamine 5'-phosphate oxidase-related FMN-binding alias=ACD50_C00101G00011,ACD50_35540.10471.9G0011,ACD50_35540.10471.9_11 id=72269 tax=ACD50 species=Frankia sp. EAN1pec genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria organism_group=OP11 organism_desc=OP11
ACD50_101_12
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(8138..8584)
DNA (447bp) protein (149aa)
8138..8584 - (rbs_motif=ATAAT rbs_spacer=7bp)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
ACD50_101_13
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(8832..9968)
DNA (1137bp) protein (379aa)
hypothetical protein
DEAD/DEAH box helicase-like protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3I1F5_9BACT (db=UNIREF evalue=1.0e-72 bit_score=277.0 identity=41.53 coverage=97.8891820580475)
seg (db=Seg db_id=seg from=362 to=373)
DEAD BOX ATP-DEPENDENT RNA HELICASE (db=HMMPanther db_id=PTHR10967 from=32 to=378 evalue=1.8e-132)
ACD50_101_14

Not on your lists

comp(10213..10416)
DNA (204bp) protein (68aa)
XRE family transcriptional regulator
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=65 evalue=1.0e-11 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00530 from=6 to=62 evalue=3.7e-06 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
HTH_3 (db=HMMPfam db_id=PF01381 from=13 to=61 evalue=1.6e-05 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
ACD50_101_15
unknown

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comp(10426..10503)
DNA (78bp) protein (26aa)
10426..10503 - (rbs_motif=None rbs_spacer=None)
Displaying 15 items

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