Alias: ACD50_72014.25789.8
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD50_118_1
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
comp(1..1011)
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Proline--tRNA ligase n=1 Tax=Turicibacter sp. PC909 RepID=D4W313_9FIRM (db=UNIREF evalue=7.0e-80 bit_score=300.0 identity=42.81 coverage=96.4391691394659)
prolyl-tRNA synthetase
TRNA SYNTHETASE-RELATED (db=HMMPanther db_id=PTHR11451 from=38 to=326 evalue=7.0e-112)
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ACD50_118_2
uncultured bacterium, Bacteria
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Not on your lists |
comp(1013..1348)
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Chaperonin csaA n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NYJ3_9RHOB (db=UNIREF evalue=8.0e-33 bit_score=142.0 identity=60.55 coverage=95.5357142857143)
Non-chaperonin molecular chaperone ATPase
chap_CsaA: export-related chaperone CsaA (db=HMMTigr db_id=TIGR02222 from=4 to=111 evalue=3.5e-60 interpro_id=IPR008231 interpro_description=Secretion chaperone CsaA)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=111 evalue=2.6e-31 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
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ACD50_118_3
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
1452..1649
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1452..1649 + (rbs_motif=ATA rbs_spacer=6bp)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
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ACD50_118_4
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
comp(1744..2631)
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6-phosphogluconate dehydrogenase
seg (db=Seg db_id=seg from=149 to=162)
gnd_rel: 6-phosphogluconate dehydrogenase (d (db=HMMTigr db_id=TIGR00872 from=1 to=295 evalue=4.6e-92 interpro_id=IPR004849 interpro_description=6-phosphogluconate dehydrogenase related protein)
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=1 to=161 evalue=6.0e-49 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: binding (GO:0005488), Biological Process: metabolic process (GO:0008152))
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ACD50_118_5
uncultured bacterium, Bacteria
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Not on your lists |
comp(2636..2956)
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methionyl-tRNA synthetase (EC:6.1.1.10)
seg (db=Seg db_id=seg from=89 to=101)
metG_C_term: methionyl-tRNA synthetase, b (db=HMMTigr db_id=TIGR00399 from=2 to=106 evalue=2.9e-35 interpro_id=IPR004495 interpro_description=Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: methionine-tRNA ligase activity (GO:0004825), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: methionyl-tRNA aminoacylation
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=106 evalue=2.7e-34 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
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ACD50_118_6
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
comp(2953..3375)
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2953..3375 - (rbs_motif=ATAA rbs_spacer=3bp)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
hypothetical protein
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ACD50_118_7
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
comp(3379..4836)
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Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C7Y0_SPHTD (db=UNIREF evalue=9.0e-129 bit_score=464.0 identity=46.57 coverage=98.7654320987654)
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
G6P_DEHYDROGENASE (db=PatternScan db_id=PS00069 from=181 to=187 evalue=0.0 interpro_id=IPR019796 interpro_description=Glucose-6-phosphate dehydrogenase, active site GO=Molecular Function: glucose-6-phosphate dehydrogenase activity (GO:0004345), Biological Process: glucose metabolic process (GO:0006006), Biological Process: oxidation reduction (GO:0055114))
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ACD50_118_8
uncultured bacterium, Bacteria
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Not on your lists |
comp(4842..5474)
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arylformamidase (EC:3.5.1.9)
seg (db=Seg db_id=seg from=94 to=109)
Putative cyclase (db=superfamily db_id=SSF102198 from=4 to=210 evalue=2.3e-61)
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N-formyl-L-kynurenine + H2O = formate + L-kynurenine
Jill Banfield
(11/15/12)
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ACD50_118_9
uncultured bacterium, Bacteria
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Not on your lists |
comp(5492..6691)
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hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=365 to=384)
transmembrane_regions (db=TMHMM db_id=tmhmm from=319 to=341)
seg (db=Seg db_id=seg from=152 to=165)
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ACD50_118_10
uncultured bacterium, Bacteria
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Not on your lists |
comp(6761..7321)
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ribosome recycling factor
coiled-coil (db=Coil db_id=coil from=147 to=175 evalue=NA)
RIBOSOME RECYCLING FACTOR (db=HMMPanther db_id=PTHR20982 from=2 to=186 evalue=1.7e-60 interpro_id=IPR002661 interpro_description=Ribosome recycling factor GO=Biological Process: translation (GO:0006412))
RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF) (db=HMMPanther db_id=PTHR20982:SF3 from=2 to=186 evalue=1.7e-60 interpro_id=IPR015998 interpro_description=Ribosome recycling factor, bacterial-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: translational termination (GO:0006415))
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ACD50_118_11
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
comp(7372..7581)
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7372..7581 - (rbs_motif=AAT rbs_spacer=10bp)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
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ACD50_118_12
uncultured bacterium, Bacteria
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Not on your lists |
comp(7606..8061)
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tsf; translation elongation factor Ts
ELONGATION FACTOR TS (db=HMMPanther db_id=PTHR11741 from=7 to=151 evalue=1.8e-37 interpro_id=IPR001816 interpro_description=Translation elongation factor EFTs/EF1B GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
Elongation factor Ts (EF-Ts), dimerisation domain (db=superfamily db_id=SSF54713 from=54 to=151 evalue=1.3e-28 interpro_id=IPR014039 interpro_description=Translation elongation factor EFTs/EF1B, dimerisation GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
no description (db=Gene3D db_id=G3DSA:3.30.479.20 from=57 to=150 evalue=2.4e-27 interpro_id=IPR014039 interpro_description=Translation elongation factor EFTs/EF1B, dimerisation GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
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ACD50_118_13
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
comp(8033..8872)
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rpsB; 30S ribosomal protein S2
seg (db=Seg db_id=seg from=242 to=254)
seg (db=Seg db_id=seg from=259 to=275)
RIBOSOMAL_S2_2 (db=PatternScan db_id=PS00963 from=160 to=184 evalue=0.0 interpro_id=IPR018130 interpro_description=Ribosomal protein S2, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD50_118_14
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
comp(9015..9392)
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seg (db=Seg db_id=seg from=39 to=53)
seg 39..53 Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
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ACD50_118_15
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
9478..10533
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3-oxoacyl-ACP synthase (EC:2.3.1.41)
Thiolase-like (db=superfamily db_id=SSF53901 from=212 to=350 evalue=2.9e-25 interpro_id=IPR016039 interpro_description=Thiolase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACP_syn_III_C (db=HMMPfam db_id=PF08541 from=264 to=349 evalue=8.6e-22 interpro_id=IPR013747 interpro_description=3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal GO=Biological Process: lipid biosynthetic process (GO:0008610), Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747))
Thiolase-like (db=superfamily db_id=SSF53901 from=24 to=202 evalue=3.4e-18 interpro_id=IPR016039 interpro_description=Thiolase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
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ACD50_118_16
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
comp(10647..11189)
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seg (db=Seg db_id=seg from=159 to=173)
seg 159..173 Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
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ACD50_118_17
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
comp(11201..12127)
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3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
ADH_SHORT (db=PatternScan db_id=PS00061 from=210 to=238 evalue=0.0 interpro_id=IPR020904 interpro_description=Short-chain dehydrogenase/reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491))
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=67 to=296 evalue=1.0e-60)
3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE (db=HMMPanther db_id=PTHR19410:SF87 from=67 to=299 evalue=2.1e-60)
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ACD50_118_18
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
12185..13093
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12185..13093 + (rbs_motif=ATAAT rbs_spacer=10bp)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
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ACD50_118_19
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
comp(13265..14131)
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13265..14131 - (rbs_motif=ATAA rbs_spacer=9bp)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
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ACD50_118_20
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
14269..15195
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seg (db=Seg db_id=seg from=251 to=263)
Ferritin-like (db=superfamily db_id=SSF47240 from=17 to=265 evalue=5.8e-22 interpro_id=IPR009078 interpro_description=Ferritin/ribonucleotide reductase-like GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: transition metal ion binding (GO:0046914), Biological Process: oxidation reduction (GO:0055114))
no description (db=Gene3D db_id=G3DSA:1.10.620.20 from=3 to=222 evalue=4.2e-12 interpro_id=IPR012348 interpro_description=Ribonucleotide reductase-related GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
FA_desaturase_2 (db=HMMPfam db_id=PF03405 from=78 to=223 evalue=4.1e-08 interpro_id=IPR005067 interpro_description=Fatty acid desaturase, type 2 GO=Biological Process: fatty acid metabolic process (GO:0006631), Molecular Function: acyl-[acyl-carrier-protein] desaturase activity (GO:0045300), Biological Process: oxidation reduction (GO:0055114))
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ACD50_118_21
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
comp(15252..16571)
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Serine hydroxymethyltransferase n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DIJ0_9EURY (db=UNIREF evalue=3.0e-135 bit_score=485.0 identity=53.3 coverage=99.3181818181818)
glycine hydroxymethyltransferase (EC:2.1.2.1)
glycine hydroxymethyltransferase (EC:2.1.2.1)
SHMT (db=PatternScan db_id=PS00096 from=217 to=233 evalue=0.0 interpro_id=IPR019798 interpro_description=Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO=Molecular Function: glycine hydroxymethyltransferase activity (GO:0004372), Biological Process: glycine metabolic process (GO:0006544), Biological Process: L-serine metabolic process (GO:0006563), Molecular Function: pyridoxal phosphate binding (GO:0030170))
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ACD50_118_22
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
16626..18638
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seg (db=Seg db_id=seg from=520 to=535)
seg (db=Seg db_id=seg from=482 to=497)
coiled-coil (db=Coil db_id=coil from=480 to=501 evalue=NA)
coiled-coil 480..501 Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
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ACD50_118_23
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
comp(18658..19896)
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18658..19896 - (rbs_motif=TAA rbs_spacer=5bp)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
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ACD50_118_24
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
comp(19902..20534)
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deoxyguanosine kinase
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=209 evalue=5.3e-31)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=5 to=208 evalue=6.2e-29)
DEOXYGUANOSINE KINASE/DEOXYADENOSINE KINASE (db=HMMPanther db_id=PTHR10513:SF3 from=8 to=205 evalue=9.1e-22)
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ACD50_118_25
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
comp(20536..21033)
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dfrA; Dihydrofolate reductase (EC:1.5.1.3)
seg (db=Seg db_id=seg from=25 to=36)
Dihydrofolate reductase-like (db=superfamily db_id=SSF53597 from=1 to=165 evalue=6.9e-51)
DHFR_1 (db=HMMPfam db_id=PF00186 from=1 to=164 evalue=2.5e-46 interpro_id=IPR001796 interpro_description=Dihydrofolate reductase domain GO=Molecular Function: dihydrofolate reductase activity (GO:0004146), Biological Process: glycine biosynthetic process (GO:0006545), Biological Process: nucleotide biosynthetic process (GO:0009165))
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ACD50_118_26
uncultured bacterium, Bacteria
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Not on your lists |
comp(21037..22143)
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hypothetical protein
seg (db=Seg db_id=seg from=132 to=151)
thym_sym: thymidylate synthase (db=HMMTigr db_id=TIGR03284 from=31 to=364 evalue=4.4e-122 interpro_id=IPR000398 interpro_description=Thymidylate synthase GO=Molecular Function: thymidylate synthase activity (GO:0004799), Biological Process: dTMP biosynthetic process (GO:0006231))
Thymidylate synthase/dCMP hydroxymethylase (db=superfamily db_id=SSF55831 from=27 to=364 evalue=8.5e-108 interpro_id=IPR000398 interpro_description=Thymidylate synthase GO=Molecular Function: thymidylate synthase activity (GO:0004799), Biological Process: dTMP biosynthetic process (GO:0006231))
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ACD50_118_27
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
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Not on your lists |
comp(22095..22634)
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dcd2; deoxycytidine deaminase
dUTPase-like (db=superfamily db_id=SSF51283 from=1 to=177 evalue=1.1e-24)
no description (db=Gene3D db_id=G3DSA:2.70.40.10 from=1 to=179 evalue=3.0e-24)
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ACD50_118_28
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
|
Not on your lists |
comp(22730..23419)
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dTMP kinase (EC:2.7.4.9)
dTMP kinase n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHA0_9EURY (db=UNIREF evalue=2.0e-19 bit_score=99.4 identity=37.74 coverage=60.4347826086956)
seg (db=Seg db_id=seg from=214 to=227)
seg (db=Seg db_id=seg from=179 to=192)
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ACD50_118_29
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
|
Not on your lists |
23496..23813
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23496..23813 + (rbs_motif=ATAA rbs_spacer=8bp)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
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ACD50_118_30
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria
|
Not on your lists |
23821..24471
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23821..24471 + (rbs_motif=AAGAA rbs_spacer=12bp)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
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