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ACD50_147

Alias: ACD50_116134.2474.4

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Displaying 5 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD50_147_1
ACD50, ACD50, ACD50, ACD50, Microgenomates, Bacteria

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comp(3..74)
DNA (72bp) protein (24aa)
3..74 - (rbs_motif=ATAAT rbs_spacer=11bp)
ACD50_147_2

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155..487
DNA (333bp) protein (111aa)
50S ribosomal protein L24
seg (db=Seg db_id=seg from=51 to=65)
RIBOSOMAL_L24 (db=PatternScan db_id=PS01108 from=6 to=23 evalue=0.0 interpro_id=IPR005825 interpro_description=Ribosomal protein L24/L26, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplX_bact: ribosomal protein L24 (db=HMMTigr db_id=TIGR01079 from=1 to=110 evalue=1.4e-29 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD50_147_3

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515..1060
DNA (546bp) protein (182aa)
50S ribosomal protein L5
RIBOSOMAL_L5 (db=PatternScan db_id=PS00358 from=59 to=75 evalue=0.0 interpro_id=IPR020929 interpro_description=Ribosomal protein L5, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L5 (db=HMMPanther db_id=PTHR11994:SF4 from=2 to=181 evalue=3.5e-69)
60S RIBOSOMAL PROTEIN L11-RELATED (db=HMMPanther db_id=PTHR11994 from=2 to=181 evalue=3.5e-69 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
excluded practice concatenation kelly wrighton (11/15/12)
ACD50_147_4
GWC1_OD1_45_14, Parcubacteria, Bacteria

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1363..1800
DNA (438bp) protein (146aa)
rpsH; 30S ribosomal protein S8
seg (db=Seg db_id=seg from=118 to=133)
Ribosomal_S8 (db=HMMPfam db_id=PF00410 from=3 to=116 evalue=3.7e-35 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S8 (db=superfamily db_id=SSF56047 from=2 to=116 evalue=1.8e-29 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD50_147_5

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1922..2458
DNA (537bp) protein (179aa)
50S ribosomal protein L6
L6_bact: ribosomal protein L6 (db=HMMTigr db_id=TIGR03654 from=2 to=175 evalue=1.7e-77 interpro_id=IPR019906 interpro_description=Ribosomal protein L6, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
60S/50S RIBOSOMAL PROTEIN L6/L9 (db=HMMPanther db_id=PTHR11655 from=2 to=177 evalue=1.5e-61 interpro_id=IPR000702 interpro_description=Ribosomal protein L6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
50S RIBOSOMAL PROTEIN L6 (db=HMMPanther db_id=PTHR11655:SF6 from=2 to=177 evalue=1.5e-61)
excluded phylogenetic concatenation practice v1 kelly wrighton (11/15/12)
Displaying 5 items

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