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ACD50_184

Alias: ACD50_75978.7352.8

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD50_184_1
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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comp(3..728)
DNA (726bp) protein (242aa)
putative peptidoglycan lipid II flippase MurJ
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=39)
seg (db=Seg db_id=seg from=150 to=164)
seg (db=Seg db_id=seg from=186 to=201)
ACD50_184_2
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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770..1090
DNA (321bp) protein (107aa)
seg (db=Seg db_id=seg from=92 to=106)
seg (db=Seg db_id=seg from=46 to=81)
Ribosomal protein S20 (db=superfamily db_id=SSF46992 from=3 to=79 evalue=6.1e-13 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:1.20.58.110 from=5 to=94 evalue=1.2e-11 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD50_184_3
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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1177..2364
DNA (1188bp) protein (396aa)
hypothetical protein
hypothetical protein
Elongation factor Tu n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WTX5_ALIAD (db=UNIREF evalue=5.0e-167 bit_score=590.0 identity=73.15 coverage=98.2323232323232)
seg (db=Seg db_id=seg from=145 to=159)
ACD50_184_4
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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2378..2686
DNA (309bp) protein (103aa)
SSU ribosomal protein S10P
RIBOSOMAL_S10 (db=PatternScan db_id=PS00361 from=29 to=44 evalue=0.0 interpro_id=IPR018268 interpro_description=Ribosomal protein S10, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsJ_bact: ribosomal protein S10 (db=HMMTigr db_id=TIGR01049 from=4 to=102 evalue=3.0e-56 interpro_id=IPR005731 interpro_description=Ribosomal protein S10 subgroup GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
30S RIBOSOMAL PROTEIN S10 (db=HMMPanther db_id=PTHR11700:SF2 from=1 to=102 evalue=1.1e-49 interpro_id=IPR005731 interpro_description=Ribosomal protein S10 subgroup GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD50_184_5

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2881..3609
DNA (729bp) protein (243aa)
rplC; 50S ribosomal protein L3
seg (db=Seg db_id=seg from=220 to=239)
RIBOSOMAL_L3 (db=PatternScan db_id=PS00474 from=106 to=129 evalue=0.0 interpro_id=IPR019926 interpro_description=Ribosomal protein L3, conserved site)
L3_bact: 50S ribosomal protein L3 (db=HMMTigr db_id=TIGR03625 from=5 to=207 evalue=5.0e-88 interpro_id=IPR019927 interpro_description=Ribosomal protein L3, bacterial/organelle-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD50_184_6
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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3599..4369
DNA (771bp) protein (257aa)
rplD; 50S ribosomal protein L4
seg (db=Seg db_id=seg from=148 to=159)
seg (db=Seg db_id=seg from=4 to=26)
50S RIBOSOMAL PROTEIN L4 (db=HMMPanther db_id=PTHR10746:SF2 from=57 to=252 evalue=7.6e-67 interpro_id=IPR015498 interpro_description=Ribosomal protein L4)
ACD50_184_7
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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4371..4670
DNA (300bp) protein (100aa)
50S ribosomal protein L25
Ribosomal proteins S24e, L23 and L15e (db=superfamily db_id=SSF54189 from=1 to=94 evalue=1.0e-20 interpro_id=IPR012678 interpro_description=Ribosomal protein L23/L15e, core GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L23 (db=HMMPfam db_id=PF00276 from=5 to=92 evalue=2.0e-19 interpro_id=IPR013025 interpro_description=Ribosomal protein L25/L23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.70.330 from=2 to=93 evalue=3.1e-19 interpro_id=IPR012677 interpro_description=Nucleotide-binding, alpha-beta plait GO=Molecular Function: nucleotide binding (GO:0000166))
ACD50_184_8
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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4676..5416
DNA (741bp) protein (247aa)
rplB; 50S ribosomal protein L2
rplB_bact: ribosomal protein L2 (db=HMMTigr db_id=TIGR01171 from=1 to=246 evalue=7.6e-116 interpro_id=IPR005880 interpro_description=Ribosomal protein L2, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934), Molecular Function: transferase activity (GO:0016740))
Ribosomal protein, L2p/L2a/L8e/organellar L2 types (db=HMMPIR db_id=PIRSF002158 from=1 to=244 evalue=3.5e-87 interpro_id=IPR002171 interpro_description=Ribosomal protein L2 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L2 (db=HMMPanther db_id=PTHR13691 from=64 to=245 evalue=9.5e-82 interpro_id=IPR002171 interpro_description=Ribosomal protein L2 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD50_184_9

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5417..5701
DNA (285bp) protein (95aa)
30S ribosomal protein S19
seg (db=Seg db_id=seg from=13 to=24)
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=53 to=77 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
rpsS_bact: ribosomal protein S19 (db=HMMTigr db_id=TIGR01050 from=1 to=93 evalue=3.9e-49 interpro_id=IPR005732 interpro_description=Ribosomal protein S19, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD50_184_10
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists


5737..6084
DNA (348bp) protein (116aa)
50S ribosomal protein L22
seg (db=Seg db_id=seg from=54 to=62)
Ribosomal_L22 (db=HMMPfam db_id=PF00237 from=6 to=108 evalue=1.0e-31 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L22 (db=superfamily db_id=SSF54843 from=1 to=110 evalue=1.5e-31 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD50_184_11
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists


6068..6712
DNA (645bp) protein (215aa)
30S ribosomal protein S3
30S ribosomal protein S3 n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GGA8_9FIRM (db=UNIREF evalue=2.0e-45 bit_score=185.0 identity=47.89 coverage=95.3488372093023)
seg (db=Seg db_id=seg from=162 to=173)
RIBOSOMAL_S3 (db=PatternScan db_id=PS00548 from=170 to=204 evalue=0.0 interpro_id=IPR018280 interpro_description=Ribosomal protein S3, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD50_184_12
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists


6712..7122
DNA (411bp) protein (137aa)
rplP; 50S ribosomal protein L16
RIBOSOMAL_L16_2 (db=PatternScan db_id=PS00701 from=82 to=93 evalue=0.0 interpro_id=IPR020798 interpro_description=Ribosomal protein L16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplP_bact: ribosomal protein L16 (db=HMMTigr db_id=TIGR01164 from=2 to=127 evalue=1.3e-73 interpro_id=IPR000114 interpro_description=Ribosomal protein L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
50S/60S RIBOSOMAL PROTEIN L16 (db=HMMPanther db_id=PTHR12220 from=1 to=134 evalue=2.3e-53 interpro_id=IPR000114 interpro_description=Ribosomal protein L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD50_184_13
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

Not on your lists


7190..7384
DNA (195bp) protein (65aa)
seg (db=Seg db_id=seg from=28 to=41)
coiled-coil (db=Coil db_id=coil from=7 to=35 evalue=NA)
Ribosomal_L29 (db=HMMPfam db_id=PF00831 from=7 to=61 evalue=2.2e-10 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L29 (L29p) (db=superfamily db_id=SSF46561 from=4 to=63 evalue=6.3e-08 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying 13 items

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