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ACD50_196

Alias: ACD50_26819.5128.8

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD50_196_1

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3..260
DNA (258bp) protein (86aa)
SSU ribosomal protein S17p
seg (db=Seg db_id=seg from=37 to=49)
RIBOSOMAL_S17 (db=PatternScan db_id=PS00056 from=60 to=72 evalue=0.0 interpro_id=IPR019979 interpro_description=Ribosomal protein S17, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER (db=HMMPanther db_id=PTHR10744 from=7 to=85 evalue=6.1e-27 interpro_id=IPR000266 interpro_description=Ribosomal protein S17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD50_196_2
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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257..631
DNA (375bp) protein (125aa)
rplN; 50S ribosomal protein L14
50S ribosomal protein L14 n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=D2Z923_9BACT (db=UNIREF evalue=8.0e-36 bit_score=152.0 identity=59.68 coverage=96.8)
rplN_bact: ribosomal protein L14 (db=HMMTigr db_id=TIGR01067 from=1 to=124 evalue=2.7e-63 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
50S RIBOSOMAL PROTEIN L14 (db=HMMPanther db_id=PTHR11761:SF3 from=1 to=124 evalue=1.1e-53 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
ACD50_196_3
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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628..933
DNA (306bp) protein (102aa)
rplX; 50S ribosomal protein L24
seg (db=Seg db_id=seg from=89 to=101)
rplX_bact: ribosomal protein L24 (db=HMMTigr db_id=TIGR01079 from=1 to=101 evalue=1.3e-33 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
MITOCHONDRIAL RIBOSOMAL PROTEIN L24 (db=HMMPanther db_id=PTHR12903 from=1 to=101 evalue=1.0e-28 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD50_196_4
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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915..1481
DNA (567bp) protein (189aa)
rplE; 50S ribosomal protein L5
60S RIBOSOMAL PROTEIN L11-RELATED (db=HMMPanther db_id=PTHR11994 from=2 to=187 evalue=1.9e-70 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L5 (db=HMMPanther db_id=PTHR11994:SF4 from=2 to=187 evalue=1.9e-70)
Ribosomal protein, L5p/L5a/L11e/organellar L5 types (db=HMMPIR db_id=PIRSF002161 from=1 to=188 evalue=1.5e-66 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD50_196_5

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1493..1678
DNA (186bp) protein (62aa)
rpsN; 30S ribosomal protein S14
RIBOSOMAL_S14 (db=PatternScan db_id=PS00527 from=23 to=45 evalue=0.0 interpro_id=IPR018271 interpro_description=Ribosomal protein S14, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S14 (db=HMMPanther db_id=PTHR19836 from=13 to=61 evalue=8.7e-27 interpro_id=IPR001209 interpro_description=Ribosomal protein S14 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S14 (db=HMMPfam db_id=PF00253 from=9 to=60 evalue=8.6e-23 interpro_id=IPR001209 interpro_description=Ribosomal protein S14 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD50_196_6
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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1697..2089
DNA (393bp) protein (131aa)
rpsH; 30S ribosomal protein S8
Ribosomal_S8 (db=HMMPfam db_id=PF00410 from=3 to=130 evalue=4.7e-36 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S8 (db=superfamily db_id=SSF56047 from=2 to=130 evalue=2.3e-34 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S8 (db=HMMPanther db_id=PTHR11758 from=1 to=130 evalue=2.4e-22 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD50_196_7

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2108..2659
DNA (552bp) protein (184aa)
rplF; 50S ribosomal protein L6
seg (db=Seg db_id=seg from=172 to=183)
RIBOSOMAL_L6_1 (db=PatternScan db_id=PS00525 from=154 to=162 evalue=0.0 interpro_id=IPR002358 interpro_description=Ribosomal protein L6, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L6_bact: ribosomal protein L6 (db=HMMTigr db_id=TIGR03654 from=2 to=176 evalue=1.2e-87 interpro_id=IPR019906 interpro_description=Ribosomal protein L6, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD50_196_8
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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2662..2997
DNA (336bp) protein (112aa)
rplR; putative 50S ribosomal protein L18
50S ribosomal protein L18 n=1 Tax=Kordia algicida OT-1 RepID=A9DIS1_9FLAO (db=UNIREF evalue=4.0e-16 bit_score=87.0 identity=47.27 coverage=97.3214285714286)
seg (db=Seg db_id=seg from=64 to=85)
Translational machinery components (db=superfamily db_id=SSF53137 from=16 to=111 evalue=2.8e-30)
ACD50_196_9

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2997..3455
DNA (459bp) protein (153aa)
30S ribosomal protein S5
seg (db=Seg db_id=seg from=33 to=49)
seg (db=Seg db_id=seg from=97 to=115)
seg (db=Seg db_id=seg from=138 to=145)
ACD50_196_10
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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3461..3904
DNA (444bp) protein (148aa)
50S ribosomal protein L15 n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NXE9_9BACE (db=UNIREF evalue=3.0e-09 bit_score=63.9 identity=43.53 coverage=52.7027027027027)
seg (db=Seg db_id=seg from=18 to=41)
seg (db=Seg db_id=seg from=130 to=145)
RIBOSOMAL_L15 (db=PatternScan db_id=PS00475 from=112 to=141 evalue=0.0 interpro_id=IPR001196 interpro_description=Ribosomal protein L15, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD50_196_11

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3897..5162
DNA (1266bp) protein (422aa)
hypothetical protein
hypothetical protein
Preprotein translocase subunit secY n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFE6_THET1 (db=UNIREF evalue=2.0e-103 bit_score=380.0 identity=51.18 coverage=97.6303317535545)
transmembrane_regions (db=TMHMM db_id=tmhmm from=308 to=330)
Displaying 11 items

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