Alias: ACD51_48308.71846.10
name | lists | location/seqs | annotations | notes |
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ACD51_11_1
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
1..1470
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seg (db=Seg db_id=seg from=463 to=477)
Lysozyme-like (db=superfamily db_id=SSF53955 from=15 to=131 evalue=2.8e-09)
no description (db=Gene3D db_id=G3DSA:1.10.530.10 from=20 to=131 evalue=0.00021)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
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ACD51_11_2
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
1442..2293
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N-acetylmuramoyl-L-alanine amidase n=1 Tax=Pedobacter sp. BAL39 RepID=A6EDQ9_9SPHI (db=UNIREF evalue=2.0e-08 bit_score=63.5 identity=30.34 coverage=45.0704225352113)
lipoprotein
N-acetylmuramoyl-L-alanine amidase-like (db=superfamily db_id=SSF55846 from=13 to=167 evalue=9.3e-18 interpro_id=IPR002502 interpro_description=N-acetylmuramoyl-L-alanine amidase, family 2 GO=Molecular Function: N-acetylmuramoyl-L-alanine amidase activity (GO:0008745), Biological Process: peptidoglycan catabolic process (GO:0009253))
Amidase_2 (db=HMMPfam db_id=PF01510 from=13 to=134 evalue=5.9e-16 interpro_id=IPR002502 interpro_description=N-acetylmuramoyl-L-alanine amidase, family 2 GO=Molecular Function: N-acetylmuramoyl-L-alanine amidase activity (GO:0008745), Biological Process: peptidoglycan catabolic process (GO:0009253))
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ACD51_11_3
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
2313..3641
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Ribulose-bisphosphate carboxylase n=1 Tax=Methanohalophilus mahii DSM 5219 RepID=D5EB97_METMS (db=UNIREF evalue=5.0e-145 bit_score=518.0 identity=57.39 coverage=96.8397291196388)
ribulose 1,5-bisphosphate carboxylase, large subunit
ribulose 1,5-bisphosphate carboxylase, large subunit
RUBISCO_LARGE (db=PatternScan db_id=PS00157 from=176 to=184 evalue=0.0 interpro_id=IPR020878 interpro_description=Ribulose bisphosphate carboxylase, large chain, active site GO=Molecular Function: magnesium ion binding (GO:0000287), Cellular Component: plastid (GO:0009536), Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984))
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active site residues conserved
Jill Banfield
(11/15/12)
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ACD51_11_4
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
3701..3946
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transmembrane_regions (db=TMHMM db_id=tmhmm from=56 to=73)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=46)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
seg (db=Seg db_id=seg from=5 to=17)
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ACD51_11_5
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(3953..4585)
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zinc/iron permease
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVF4_9BACT (db=UNIREF evalue=2.0e-51 bit_score=205.0 identity=52.04 coverage=91.4691943127962)
seg (db=Seg db_id=seg from=136 to=149)
seg (db=Seg db_id=seg from=196 to=209)
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ACD51_11_6
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(4765..5382)
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hypothetical protein
seg (db=Seg db_id=seg from=4 to=13)
seg (db=Seg db_id=seg from=110 to=124)
transmembrane_regions (db=TMHMM db_id=tmhmm from=174 to=196)
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ACD51_11_7
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(5481..6503)
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seg (db=Seg db_id=seg from=258 to=268)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg 258..268 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
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ACD51_11_8
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
6730..6945
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transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=68)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
seg (db=Seg db_id=seg from=56 to=68)
ATPASE_C (db=PatternScan db_id=PS00605 from=34 to=55 evalue=0.0 interpro_id=IPR020537 interpro_description=ATPase, F0 complex, subunit C, DCCD-binding site)
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ACD51_11_9
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
6966..7472
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seg (db=Seg db_id=seg from=18 to=40)
seg (db=Seg db_id=seg from=55 to=69)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
coiled-coil (db=Coil db_id=coil from=47 to=75 evalue=NA)
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ACD51_11_10
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
7538..7939
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seg (db=Seg db_id=seg from=76 to=91)
OSCP (db=HMMPfam db_id=PF00213 from=19 to=131 evalue=3.8e-19 interpro_id=IPR000711 interpro_description=ATPase, F1 complex, OSCP/delta subunit GO=Cellular Component: plasma membrane (GO:0005886), Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933))
ATP SYNTHASE DELTA CHAIN (db=HMMPanther db_id=PTHR11910 from=11 to=133 evalue=1.6e-10 interpro_id=IPR000711 interpro_description=ATPase, F1 complex, OSCP/delta subunit GO=Cellular Component: plasma membrane (GO:0005886), Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933))
seg 76..91 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
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ACD51_11_11
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
7957..9465
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ATP synthase subunit alpha n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDI2_THET1 (db=UNIREF evalue=0.0 bit_score=676.0 identity=65.99 coverage=97.4155069582505)
ATP synthase F1 subunit alpha (EC:3.6.3.14)
ATP synthase F1 subunit alpha (EC:3.6.3.14)
coiled-coil (db=Coil db_id=coil from=371 to=392 evalue=NA)
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ACD51_11_12
uncultured bacterium, Bacteria
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Not on your lists |
9471..10382
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ATP synthase F1 subunit gamma
seg (db=Seg db_id=seg from=287 to=300)
seg (db=Seg db_id=seg from=6 to=23)
ATPsyn_F1gamma: ATP synthase F1, gamma (db=HMMTigr db_id=TIGR01146 from=1 to=301 evalue=1.4e-82 interpro_id=IPR000131 interpro_description=ATPase, F1 complex, gamma subunit GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933), Molecular Function: proton-transporting ATPase activity, rotati
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ACD51_11_13
uncultured bacterium, Bacteria
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Not on your lists |
10408..11772
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atpD; ATP synthase F0F1 subunit beta (EC:3.6.3.14)
atpD; ATP synthase F0F1 subunit beta (EC:3.6.3.14)
ATP synthase subunit beta n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=ATPB_MOOTA (db=UNIREF evalue=0.0 bit_score=644.0 identity=71.78 coverage=98.6813186813187)
seg (db=Seg db_id=seg from=140 to=155)
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ACD51_11_14
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
11859..12296
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ATP synthase F1 subunit epsilon
seg (db=Seg db_id=seg from=90 to=102)
coiled-coil (db=Coil db_id=coil from=90 to=135 evalue=NA)
ATP SYNTHASE EPSILON CHAIN (db=HMMPanther db_id=PTHR13822:SF2 from=2 to=132 evalue=6.0e-32)
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ACD51_11_15
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
12296..12550
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transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=65)
transmembrane_regions 9..31 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
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ACD51_11_16
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
12552..13310
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ATP synthase F0 subunit A
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
transmembrane_regions (db=TMHMM db_id=tmhmm from=83 to=102)
transmembrane_regions (db=TMHMM db_id=tmhmm from=134 to=156)
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ACD51_11_17
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
13342..13869
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hypothetical protein
seg (db=Seg db_id=seg from=2 to=12)
hypothetical protein alias=ACD51_48308.71846.10G0017,ACD51_48308.71846.10_17,ACD51_C00011G00017 id=73244 tax=ACD51 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=PER organism_desc=PER
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
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ACD51_11_18
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(13852..14517)
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FkbM family methyltransferase (db=KEGG evalue=8.0e-15 bit_score=83.6 identity=30.81 coverage=77.4774774774775)
fkbM_fam: methyltransferase, FkbM family (db=HMMTigr db_id=TIGR01444 from=48 to=182 evalue=7.1e-23 interpro_id=IPR006342 interpro_description=Methyltransferase FkbM)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=42 to=102 evalue=1.6e-07)
FkbM family methyltransferase alias=ACD51_48308.71846.10G0018,ACD51_48308.71846.10_18,ACD51_C00011G00018 id=73235 tax=ACD51 species=Metallosphaera sedula genus=Metallosphaera taxon_order=Sulfolobales taxon_class=Thermoprotei phylum=Crenarchaeota organism_group=PER organism_desc=PER
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ACD51_11_19
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
14601..15080
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transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=28)
transmembrane_regions 10..28 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
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ACD51_11_20
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(15046..15447)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=104 to=126)
transmembrane_regions (db=TMHMM db_id=tmhmm from=71 to=89)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=64)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
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ACD51_11_21
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(15444..16964)
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Phosphoenolpyruvate carboxylase n=2 Tax=Leptospirillum sp. Group II RepID=A3EQI3_9BACT (db=UNIREF evalue=8.0e-143 bit_score=510.0 identity=49.21 coverage=98.0276134122288)
phosphoenolpyruvate carboxylase
phosphoenolpyruvate carboxylase
PEPCase_arch: phosphoenolpyruvate carbox (db=HMMTigr db_id=TIGR02751 from=10 to=506 evalue=3.1e-173 interpro_id=IPR007566 interpro_description=Phosphoenolpyruvate carboxylase, subgroup GO=Biological Process: tricarboxylic acid cycle (GO:0006099), Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964), Biological Process: carbon fixation (GO:0015977))
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PEP + HCO3 to OAA + Pi
Together you can bypass pyruvate kinase with malic enzyme and PEP carboxylase
Used for fermentative aa synthesis to get lysine/threonine from OAA in Cornybacterium glutamicum
Part of PEP-pyruvate-OAA node- highly relevant switch for carbon flux distribution in central metabolism.
Archaea have a different amino acid structure than bacteria nad plants.
(Sauer, 2005)
kelly wrighton
(11/15/12)
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ACD51_11_22
uncultured bacterium, Bacteria
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Not on your lists |
17068..17385
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17068..17385 + (rbs_motif=TAA rbs_spacer=11bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD63724.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
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ACD51_11_23
uncultured bacterium, Bacteria
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Not on your lists |
17444..19246
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GTP-binding protein TypA n=3 Tax=Clostridium RepID=A0Q144_CLONN (db=UNIREF evalue=0.0 bit_score=680.0 identity=54.59 coverage=99.3344425956739)
hypothetical protein
hypothetical protein
EFACTOR_GTP (db=PatternScan db_id=PS00301 from=42 to=57 evalue=0.0 interpro_id=IPR000795 interpro_description=Protein synthesis factor, GTP-binding GO=Molecular Function: GTPase activity (GO:0003924), Molecular Function: GTP binding (GO:0005525))
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ACD51_11_24
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
19359..20435
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parB; chromosome partitioning protein ParB; K03497 chromosome partitioning protein, ParB family (db=KEGG evalue=8.0e-10 bit_score=68.6 identity=28.43 coverage=50.1392757660167)
Chromosome partitioning protein ParB n=1 Tax=Bartonella bacilliformis KC583 RepID=A1UQV0_BARBK (db=UNIREF evalue=8.0e-10 bit_score=68.6 identity=28.43 coverage=50.1392757660167)
seg (db=Seg db_id=seg from=299 to=308)
ParB/Sulfiredoxin (db=superfamily db_id=SSF110849 from=48 to=169 evalue=4.2e-14 interpro_id=IPR003115 interpro_description=ParB-like nuclease GO=Molecular Function: DNA binding (GO:0003677))
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ACD51_11_25
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
20495..20938
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seg (db=Seg db_id=seg from=98 to=124)
transmembrane_regions (db=TMHMM db_id=tmhmm from=106 to=128)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=77)
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ACD51_11_26
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(21227..21457)
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21227..21457 - (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
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ACD51_11_27
uncultured bacterium, Bacteria
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Not on your lists |
comp(21479..22474)
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hypothetical protein
predicted DNA methylase n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI000174294B (db=UNIREF evalue=2.0e-24 bit_score=116.0 identity=31.67 coverage=68.0722891566265)
UPF0020 (db=HMMPfam db_id=PF01170 from=130 to=194 evalue=2.6e-15 interpro_id=IPR000241 interpro_description=Putative RNA methylase)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=55 to=193 evalue=1.3e-13)
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ACD51_11_28
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
22768..23232
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hypothetical protein
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=3 to=154 evalue=3.8e-49 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
ssb: single-strand binding protein (db=HMMTigr db_id=TIGR00621 from=3 to=154 evalue=2.5e-48 interpro_id=IPR011344 interpro_description=Single-strand DNA-binding GO=Molecular Function: single-stranded DNA binding (GO:0003697), Biological Process: DNA replication (GO:0006260))
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=1 to=144 evalue=7.3e-43 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
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ACD51_11_29
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(23739..24857)
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hypothetical protein
seg (db=Seg db_id=seg from=93 to=107)
transmembrane_regions (db=TMHMM db_id=tmhmm from=347 to=366)
THROMBOSPONDIN (db=HMMPanther db_id=PTHR10199 from=267 to=337 evalue=2.0e-16)
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ACD51_11_30
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(24841..26526)
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hypothetical protein
seg (db=Seg db_id=seg from=494 to=517)
transmembrane_regions (db=TMHMM db_id=tmhmm from=304 to=323)
transmembrane_regions (db=TMHMM db_id=tmhmm from=335 to=352)
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