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ACD51_12

Alias: ACD51_37427.19982.10

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD51_12_1

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comp(3..356)
DNA (354bp) protein (118aa)
3..356 - (rbs_motif=TAA rbs_spacer=9bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD63853.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD51_12_2
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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1125..1364
DNA (240bp) protein (80aa)
seg (db=Seg db_id=seg from=6 to=19)
DUF156 (db=HMMPfam db_id=PF02583 from=7 to=64 evalue=9.3e-14 interpro_id=IPR003735 interpro_description=Protein of unknown function DUF156)
seg 6..19 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
putative transcriptional regulator
ACD51_12_3

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1376..1699
DNA (324bp) protein (108aa)
trxA; thioredoxin
THIOREDOXIN_1 (db=PatternScan db_id=PS00194 from=24 to=42 evalue=0.0 interpro_id=IPR017937 interpro_description=Thioredoxin, conserved site GO=Biological Process: cell redox homeostasis (GO:0045454))
thioredoxin: thioredoxin (db=HMMTigr db_id=TIGR01068 from=5 to=107 evalue=5.9e-41 interpro_id=IPR005746 interpro_description=Thioredoxin GO=Biological Process: glycerol ether metabolic process (GO:0006662), Molecular Function: electron carrier activity (GO:0009055), Molecular Function: protein disulfide oxidoreductase activity (GO:0015035), Biological Process: cell redox homeostasis (GO:0045454))
Thioredoxin-like (db=superfamily db_id=SSF52833 from=6 to=107 evalue=1.0e-35 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
ACD51_12_4
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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comp(1703..2449)
DNA (747bp) protein (249aa)
seg (db=Seg db_id=seg from=8 to=21)
coiled-coil (db=Coil db_id=coil from=129 to=150 evalue=NA)
coiled-coil (db=Coil db_id=coil from=22 to=43 evalue=NA)
coiled-coil 22..43 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_12_5

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comp(2580..2852)
DNA (273bp) protein (91aa)
ribosomal protein L27
50S ribosomal protein L27 n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F1D9_9PROT (db=UNIREF evalue=4.0e-23 bit_score=110.0 identity=72.46 coverage=74.7252747252747)
L27: ribosomal protein L27 (db=HMMTigr db_id=TIGR00062 from=1 to=82 evalue=2.6e-38 interpro_id=IPR001684 interpro_description=Ribosomal protein L27 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L27 (db=HMMPfam db_id=PF01016 from=2 to=75 evalue=2.0e-35 interpro_id=IPR001684 interpro_description=Ribosomal protein L27 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD51_12_6
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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comp(2997..4229)
DNA (1233bp) protein (411aa)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=27 evalue=5.0)
PROKAR_LIPOPROTEIN Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_12_7
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

4349..5836
DNA (1488bp) protein (496aa)
lipoprotein
coiled-coil (db=Coil db_id=coil from=473 to=494 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=26)
seg (db=Seg db_id=seg from=29 to=39)
ACD51_12_8
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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5841..7415
DNA (1575bp) protein (525aa)
sodium/phosphate symporter
Na+/phosphate symporter n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A497_PELCD (db=UNIREF evalue=9.0e-69 bit_score=265.0 identity=38.68 coverage=76.1904761904762)
seg (db=Seg db_id=seg from=136 to=149)
seg (db=Seg db_id=seg from=12 to=23)
ACD51_12_9
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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7543..7890
DNA (348bp) protein (116aa)
hypothetical protein
Ribosomal_S23p (db=HMMPfam db_id=PF05635 from=5 to=111 evalue=6.5e-33 interpro_id=IPR008815 interpro_description=23S rRNA-associated protein)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
S23 ribosomal protein alias=ACD51_37427.19982.10G0009,ACD51_37427.19982.10_9,ACD51_C00012G00009 id=73297 tax=ACD51 species=Lyngbya sp. PCC 8106 genus=Lyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria organism_group=PER organism_desc=PER
ACD51_12_10
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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comp(7949..9088)
DNA (1140bp) protein (380aa)
hypothetical protein
seg (db=Seg db_id=seg from=84 to=99)
seg (db=Seg db_id=seg from=31 to=46)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=60)
ACD51_12_11
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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9187..9726
DNA (540bp) protein (180aa)
hypothetical protein
seg (db=Seg db_id=seg from=149 to=161)
CSA_PPIASE_1 (db=PatternScan db_id=PS00170 from=59 to=76 evalue=0.0 interpro_id=IPR020892 interpro_description=Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site GO=Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755), Biological Process: protein folding (GO:0006457))
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (CYCLOPHILIN) (db=HMMPanther db_id=PTHR11071:SF35 from=22 to=176 evalue=9.2e-66)
ACD51_12_12

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9896..10957
DNA (1062bp) protein (354aa)
Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FZJ3_ABIDE (db=UNIREF evalue=2.0e-62 bit_score=243.0 identity=38.59 coverage=97.7401129943503)
conserved hypothetical protein TIGR00275
TIGR00275: flavoprotein, HI0933 family (db=HMMTigr db_id=TIGR00275 from=1 to=349 evalue=2.4e-96 interpro_id=IPR004792 interpro_description=Conserved hypothetical protein CHP00275, flavoprotein HI0933-like)
HI0933_like (db=HMMPfam db_id=PF03486 from=2 to=349 evalue=1.2e-90 interpro_id=IPR004792 interpro_description=Conserved hypothetical protein CHP00275, flavoprotein HI0933-like)
TIGR00275: flavoprotein, HI0933 family Jill Banfield (11/15/12)
ACD51_12_13

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10990..13020
DNA (2031bp) protein (677aa)
Sensor protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3THC2_9MICO (db=UNIREF evalue=2.0e-12 bit_score=78.6 identity=24.21 coverage=57.6070901033973)
integral membrane protein (db=KEGG evalue=1.0e-10 bit_score=72.0 identity=27.81 coverage=41.506646971935)
seg (db=Seg db_id=seg from=195 to=207)
transmembrane_regions (db=TMHMM db_id=tmhmm from=407 to=426)
ACD51_12_14
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

13040..13534
DNA (495bp) protein (165aa)
putative nucleotide-binding protein
DUF520 (db=HMMPfam db_id=PF04461 from=5 to=164 evalue=1.4e-51 interpro_id=IPR007551 interpro_description=Protein of unknown function DUF520)
YajQ-like (db=superfamily db_id=SSF89963 from=5 to=90 evalue=8.7e-23)
YajQ-like (db=superfamily db_id=SSF89963 from=91 to=164 evalue=4.9e-22)
ACD51_12_15
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(13584..13787)
DNA (204bp) protein (68aa)
hypothetical protein (db=KEGG evalue=7.0e-10 bit_score=66.2 identity=46.27 coverage=92.6470588235294)
hypothetical protein alias=ACD51_37427.19982.10G0015,ACD51_37427.19982.10_15,ACD51_C00012G00015 id=73305 tax=ACD51 species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria organism_group=PER organism_desc=PER
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_12_16
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(14025..14645)
DNA (621bp) protein (207aa)
seg (db=Seg db_id=seg from=95 to=110)
seg (db=Seg db_id=seg from=3 to=20)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=180 to=202)
ACD51_12_17
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

14719..14883
DNA (165bp) protein (55aa)
14719..14883 + (rbs_motif=TAA rbs_spacer=10bp)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_12_18
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(14886..15341)
DNA (456bp) protein (152aa)
seg (db=Seg db_id=seg from=9 to=22)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=20 evalue=6.0)
seg 9..22 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_12_19
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

15406..16518
DNA (1113bp) protein (371aa)
Putative RNA methylase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWE7_HALOH (db=UNIREF evalue=4.0e-90 bit_score=335.0 identity=46.9 coverage=98.921832884097)
RNA methylase
RNA methylase
UPF0020 (db=PatternScan db_id=PS01261 from=194 to=205 evalue=0.0 interpro_id=IPR000241 interpro_description=Putative RNA methylase)
ACD51_12_20

Not on your lists

comp(16548..16913)
DNA (366bp) protein (122aa)
16548..16913 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD63835.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD51_12_21
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

17107..17373
DNA (267bp) protein (89aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=uncultured marine bacterium 580 RepID=Q6SFL1_9BACT (db=UNIREF evalue=4.0e-19 bit_score=96.7 identity=44.32 coverage=97.752808988764)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_12_22
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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17397..17675
DNA (279bp) protein (93aa)
17397..17675 + (rbs_motif=TAA rbs_spacer=6bp)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_12_23

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17748..19868
DNA (2121bp) protein (707aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31IU1_THICR (db=UNIREF evalue=0.0 bit_score=922.0 identity=66.05 coverage=99.1513437057991)
coiled-coil (db=Coil db_id=coil from=542 to=563 evalue=NA)
Displaying 23 items

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