Alias: ACD51_61909.24439.10
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD51_27_1
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
1..417
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1..417 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
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ACD51_27_2
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
555..929
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seg (db=Seg db_id=seg from=8 to=14)
seg (db=Seg db_id=seg from=34 to=48)
seg (db=Seg db_id=seg from=63 to=78)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=19 evalue=6.0)
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ACD51_27_3
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(1000..1914)
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seg (db=Seg db_id=seg from=238 to=254)
seg (db=Seg db_id=seg from=111 to=129)
seg (db=Seg db_id=seg from=4 to=30)
seg 4..30 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
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ACD51_27_4
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
2338..3009
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transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=28)
transmembrane_regions 7..28 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
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ACD51_27_5
uncultured bacterium, Bacteria
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Not on your lists |
comp(3013..5349)
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amidotransferase
seg (db=Seg db_id=seg from=72 to=82)
seg (db=Seg db_id=seg from=27 to=40)
seg (db=Seg db_id=seg from=384 to=395)
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ACD51_27_6
uncultured bacterium, Bacteria
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Not on your lists |
comp(5414..6832)
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Prolyl-tRNA synthetase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH56_9FIRM (db=UNIREF evalue=2.0e-164 bit_score=582.0 identity=57.98 coverage=99.5771670190275)
proS; Proline--tRNA ligase (EC:6.1.1.15)
proS; Proline--tRNA ligase (EC:6.1.1.15)
proS_fam_I: prolyl-tRNA synthetase (db=HMMTigr db_id=TIGR00408 from=4 to=472 evalue=7.6e-230 interpro_id=IPR004499 interpro_description=Prolyl-tRNA synthetase, class IIa, prokaryotic-type GO=Molecular Function: proline-tRNA ligase activity (GO:0004827), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: prolyl-tRNA aminoacylation (GO:0006433))
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ACD51_27_7
uncultured bacterium, Bacteria
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Not on your lists |
comp(6939..7649)
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6939..7649 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD63466.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD51_27_8
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(7646..8770)
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Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KT03_9BACT (db=UNIREF evalue=3.0e-13 bit_score=80.1 identity=29.08 coverage=74.6666666666667)
coiled-coil (db=Coil db_id=coil from=29 to=50 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=197 to=219)
seg (db=Seg db_id=seg from=339 to=354)
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ACD51_27_9
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(8812..10071)
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actin
Actin-like ATPase involved in cell division-like protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KT04_9BACT (db=UNIREF evalue=3.0e-104 bit_score=382.0 identity=46.08 coverage=95.7142857142857)
seg (db=Seg db_id=seg from=233 to=242)
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ACD51_27_10
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(10374..11441)
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D-alanine--D-alanine ligase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=DDL_HERA2 (db=UNIREF evalue=1.0e-104 bit_score=383.0 identity=49.31 coverage=95.7865168539326)
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase (EC:6.3.2.4)
DALA_DALA_LIGASE_2 (db=PatternScan db_id=PS00844 from=275 to=304 evalue=0.0 interpro_id=IPR000291 interpro_description=D-alanine--D-alanine ligase/VANA/B/C, conserved site GO=Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716), Biological Process: peptidoglycan biosynthetic process (GO:0009252))
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ACD51_27_11
uncultured bacterium, Bacteria
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Not on your lists |
comp(11574..12233)
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exopeptidase, family M15B
seg (db=Seg db_id=seg from=47 to=58)
Hedgehog/DD-peptidase (db=superfamily db_id=SSF55166 from=37 to=211 evalue=1.8e-39 interpro_id=IPR009045 interpro_description=Hedgehog/DD-peptidase, zinc-binding motif)
no description (db=Gene3D db_id=G3DSA:3.30.1380.10 from=36 to=198 evalue=8.0e-34)
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ACD51_27_12
uncultured bacterium, Bacteria
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Not on your lists |
comp(12205..13311)
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alr; alanine racemase (EC:5.1.1.1)
ALANINE_RACEMASE (db=PatternScan db_id=PS00395 from=33 to=42 evalue=0.0 interpro_id=IPR020622 interpro_description=Alanine racemase, pyridoxal-phosphate attachment site GO=Biological Process: alanine metabolic process (GO:0006522), Molecular Function: alanine racemase activity (GO:0008784))
alr: alanine racemase (db=HMMTigr db_id=TIGR00492 from=2 to=368 evalue=1.0e-104 interpro_id=IPR000821 interpro_description=Alanine racemase GO=Biological Process: alanine metabolic process (GO:0006522), Molecular Function: alanine racemase activity (GO:0008784))
PLP-binding barrel (db=superfamily db_id=SSF51419 from=8 to=241 evalue=2.9e-57)
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ACD51_27_13
PER_GWF2_43_17, Peregrinibacteria, Bacteria
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Not on your lists |
13756..16110
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seg (db=Seg db_id=seg from=49 to=97)
seg (db=Seg db_id=seg from=100 to=111)
seg (db=Seg db_id=seg from=251 to=260)
seg (db=Seg db_id=seg from=269 to=290)
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ACD51_27_14
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
16264..16791
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metal-binding/nucleic-acid-binding protein
Putative uncharacterized protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PR13_9CLOT (db=UNIREF evalue=3.0e-09 bit_score=64.7 identity=30.54 coverage=87.5)
seg (db=Seg db_id=seg from=148 to=154)
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ACD51_27_15
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
16819..17061
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seg (db=Seg db_id=seg from=8 to=22)
seg (db=Seg db_id=seg from=57 to=79)
Ribosomal_L32p (db=HMMPfam db_id=PF01783 from=6 to=67 evalue=1.4e-13 interpro_id=IPR002677 interpro_description=Ribosomal protein L32p GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Zn-binding ribosomal proteins (db=superfamily db_id=SSF57829 from=5 to=67 evalue=2.2e-12 interpro_id=IPR011332 interpro_description=Ribosomal protein, zinc-binding domain GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD51_27_16
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
17066..17503
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N utilization substance protein B-like protein
nusB: transcription antitermination factor N (db=HMMTigr db_id=TIGR01951 from=4 to=134 evalue=5.0e-51 interpro_id=IPR011605 interpro_description=NusB antitermination factor GO=Molecular Function: transcription termination factor activity (GO:0003715), Biological Process: transcription termination (GO:0006353))
NusB-like (db=superfamily db_id=SSF48013 from=4 to=139 evalue=3.6e-37 interpro_id=IPR006027 interpro_description=NusB/RsmB/TIM44 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
NusB (db=HMMPfam db_id=PF01029 from=6 to=131 evalue=2.8e-35 interpro_id=IPR006027 interpro_description=NusB/RsmB/TIM44 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
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ACD51_27_17
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
17481..18200
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hypothetical protein
Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NB11_EUBSP (db=UNIREF evalue=4.0e-39 bit_score=164.0 identity=50.9 coverage=90.8333333333333)
seg (db=Seg db_id=seg from=89 to=112)
RNASE_3_1 (db=PatternScan db_id=PS00517 from=42 to=50 evalue=0.0 interpro_id=IPR000999 interpro_description=Ribonuclease III GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease III activity (GO:0004525), Biological Process: RNA processing (GO:0006396))
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ACD51_27_18
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(18166..18369)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=41 to=63)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
seg (db=Seg db_id=seg from=41 to=55)
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ACD51_27_19
uncultured bacterium, Bacteria
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Not on your lists |
comp(18362..19000)
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nitrogen-fixing NifU domain-containing protein
NifU_N (db=HMMPfam db_id=PF01592 from=13 to=144 evalue=8.1e-40 interpro_id=IPR002871 interpro_description=NIF system FeS cluster assembly, NifU, N-terminal GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: iron-sulfur cluster assembly (GO:0016226), Molecular Function: iron-sulfur cluster binding (GO:0051536))
IRON-SULFUR CLUSTER ASSEMBLY ENZYME (NIFU HOMOLOG) (db=HMMPanther db_id=PTHR10093 from=10 to=175 evalue=7.2e-36 interpro_id=IPR002871 interpro_description=NIF system FeS cluster assembly, NifU, N-terminal GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: iron-sulfur cluster assembly (GO:0016226), Molecular Function: iron-sulfur cluster binding (GO:0051536))
SufE/NifU (db=superfamily db_id=SSF82649 from=3 to=143 evalue=2.1e-30)
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ACD51_27_20
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(19008..20240)
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iscS; cysteine desulfurase (EC:2.8.1.7)
iscS; cysteine desulfurase (EC:2.8.1.7)
Aminotransferase, class V n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UPQ1_ROSS1 (db=UNIREF evalue=5.0e-118 bit_score=428.0 identity=56.01 coverage=91.7274939172749)
seg (db=Seg db_id=seg from=275 to=288)
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ACD51_27_21
uncultured bacterium, Bacteria
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Not on your lists |
20381..20797
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bacterioferritin (BFR) (cytochrome B-557.5)
Ferritin-like (db=superfamily db_id=SSF47240 from=1 to=138 evalue=3.2e-29 interpro_id=IPR009078 interpro_description=Ferritin/ribonucleotide reductase-like GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: transition metal ion binding (GO:0046914), Biological Process: oxidation reduction (GO:0055114))
no description (db=Gene3D db_id=G3DSA:1.20.1260.10 from=5 to=132 evalue=3.7e-28 interpro_id=IPR012347 interpro_description=Ferritin-related)
Ferritin (db=HMMPfam db_id=PF00210 from=7 to=136 evalue=3.2e-22 interpro_id=IPR008331 interpro_description=Ferritin/Dps protein GO=Biological Process: cellular iron ion homeostasis (GO:0006879), Molecular Function: ferric iron binding (GO:0008199))
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ACD51_27_22
uncultured bacterium, Bacteria
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Not on your lists |
20945..21751
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CheB methylesterase:MCP methyltransferase, CheR-type n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q08VW5_STIAU (db=UNIREF evalue=1.0e-46 bit_score=190.0 identity=37.55 coverage=98.1412639405204)
cheR; CheR methyltransferase SAM-binding domain-containing protein
no description (db=HMMSmart db_id=SM00138 from=5 to=265 evalue=5.5e-63 interpro_id=IPR000780 interpro_description=MCP methyltransferase, CheR-type GO=Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757))
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ACD51_27_23
uncultured bacterium, Bacteria
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Not on your lists |
21865..23919
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Cache sensor-containing methyl-accepting chemotaxis sensory transducer
transmembrane_regions (db=TMHMM db_id=tmhmm from=292 to=311)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
seg (db=Seg db_id=seg from=575 to=598)
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ACD51_27_24
uncultured bacterium, Bacteria
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Not on your lists |
23912..24418
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CheW protein
no description (db=HMMSmart db_id=SM00260 from=8 to=148 evalue=1.4e-34 interpro_id=IPR002545 interpro_description=CheW-like protein GO=Molecular Function: signal transducer activity (GO:0004871), Cellular Component: intracellular (GO:0005622), Biological Process: chemotaxis (GO:0006935), Biological Process: signal transduction (GO:0007165))
CheW (db=HMMPfam db_id=PF01584 from=12 to=151 evalue=1.4e-34 interpro_id=IPR002545 interpro_description=CheW-like protein GO=Molecular Function: signal transducer activity (GO:0004871), Cellular Component: intracellular (GO:0005622), Biological Process: chemotaxis (GO:0006935), Biological Process: signal transduction (GO:0007165))
CheW-like (db=superfamily db_id=SSF50341 from=1 to=157 evalue=5.8e-33 interpro_id=IPR002545 interpro_description=CheW-like protein GO=Molecular Function: signal transducer activity (GO:0004871), Cellular Component: intracellular (GO:0005622), Biological Process: chemotaxis (GO:0006935), Biological Process: signal transduction (GO:0007165))
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