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ACD51_30

Alias: ACD51_11384.23129.10

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD51_30_1
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

2..1018
DNA (1017bp) protein (339aa)
phosphoglycerate kinase (EC:2.7.2.3)
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=2 Tax=Dictyoglomus RepID=PGK_DICT6 (db=UNIREF evalue=3.0e-96 bit_score=355.0 identity=52.66 coverage=98.8200589970501)
PHOSPHOGLYCERATE KINASE (db=HMMPanther db_id=PTHR11406 from=2 to=338 evalue=2.0e-134 interpro_id=IPR001576 interpro_description=Phosphoglycerate kinase GO=Molecular Function: phosphoglycerate kinase activity (GO:0004618), Biological Process: glycolysis (GO:0006096))
ACD51_30_2
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

1021..1299
DNA (279bp) protein (93aa)
seg (db=Seg db_id=seg from=13 to=20)
transmembrane_regions (db=TMHMM db_id=tmhmm from=62 to=84)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions 7..29 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_30_3
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(1264..1470)
DNA (207bp) protein (69aa)
1264..1470 - (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_30_4
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(1483..1893)
DNA (411bp) protein (137aa)
Holliday junction resolvase-like protein
UPF0081 (db=HMMPfam db_id=PF03652 from=3 to=133 evalue=1.9e-37 interpro_id=IPR005227 interpro_description=Resolvase, holliday junction-type, YqgF-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Biological Process: response to DNA damage stimulus (GO:0006974), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=1 to=135 evalue=2.1e-33 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
no description (db=Gene3D db_id=G3DSA:3.30.420.140 from=2 to=132 evalue=2.5e-29 interpro_id=IPR005227 interpro_description=Resolvase, holliday junction-type, YqgF-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Biological Process: response to DNA damage stimulus (GO:0006974), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
ACD51_30_5
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists


comp(2018..2464)
DNA (447bp) protein (149aa)
50S ribosomal protein L9
coiled-coil (db=Coil db_id=coil from=51 to=79 evalue=NA)
50S RIBOSOMAL PROTEIN L9 (db=HMMPanther db_id=PTHR21368 from=1 to=146 evalue=1.5e-32 interpro_id=IPR000244 interpro_description=Ribosomal protein L9 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L9 (db=HMMPanther db_id=PTHR21368:SF17 from=1 to=146 evalue=1.5e-32)
ACD51_30_6
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(2475..4169)
DNA (1695bp) protein (565aa)
putative periplasmic oligopeptide-binding protein of oligopeptide ABC transporter
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=49)
seg (db=Seg db_id=seg from=397 to=406)
seg (db=Seg db_id=seg from=452 to=467)
ACD51_30_7
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(4206..4421)
DNA (216bp) protein (72aa)
seg (db=Seg db_id=seg from=26 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=48 to=70)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
SecG (db=HMMPfam db_id=PF03840 from=3 to=70 evalue=2.9e-16 interpro_id=IPR004692 interpro_description=Preprotein translocase SecG subunit GO=Biological Process: protein secretion (GO:0009306), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: integral to membrane (GO:0016021))
ACD51_30_8
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(4472..4840)
DNA (369bp) protein (123aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=98 to=115)
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=49)
ACD51_30_9
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

4951..5637
DNA (687bp) protein (229aa)
4951..5637 + (rbs_motif=TAA rbs_spacer=10bp)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_30_10

Not on your lists

comp(5615..8704)
DNA (3090bp) protein (1030aa)
isoleucyl-tRNA synthetase
isoleucyl-tRNA synthetase
Isoleucyl-tRNA synthetase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N9H8_9BACT (db=UNIREF evalue=0.0 bit_score=1071.0 identity=51.29 coverage=99.5145631067961)
seg (db=Seg db_id=seg from=23 to=40)
ACD51_30_11

Not on your lists

comp(9006..10355)
DNA (1350bp) protein (450aa)
Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SGZ0_PHYPA (db=UNIREF evalue=2.0e-150 bit_score=536.0 identity=56.57 coverage=98.8888888888889)
adenylosuccinate lyase (EC:4.3.2.2)
adenylosuccinate lyase (EC:4.3.2.2)
FUMARATE_LYASES (db=PatternScan db_id=PS00163 from=292 to=301 evalue=0.0 interpro_id=IPR020557 interpro_description=Fumarate lyase, conserved site GO=Molecular Function: catalytic activity (GO:0003824))
fumarate lyase, but best hit in acd to 28 and 65. those are Adenylosuccinase, EC 4.3.2.2 (adenylosuccinate lyase) catalyzes the eighth step in the de novo biosynthesis of purines, the formation of 5'-phosphoribosyl-5-amino-4-imidazolecarboxamide and fumarate from 1-(5- phosphoribosyl)-4-(N-succino-carboxamide). That enzyme can also catalyze the formation of fumarate and AMP from adenylosuccinate. kelly wrighton (11/15/12)
ACD51_30_12

Not on your lists

comp(10413..10862)
DNA (450bp) protein (150aa)
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
AIRC (db=HMMPfam db_id=PF00731 from=2 to=145 evalue=1.7e-36 interpro_id=IPR000031 interpro_description=1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase GO=Molecular Function: phosphoribosylaminoimidazole carboxylase activity (GO:0004638), Biological Process: 'de novo' IMP biosynthetic process (GO:0006189))
N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) (db=superfamily db_id=SSF52255 from=1 to=149 evalue=3.2e-31 interpro_id=IPR000031 interpro_description=1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase GO=Molecular Function: phosphoribosylaminoimidazole carboxylase activity (GO:0004638), Biological Process: 'de novo' IMP biosynthetic process (GO:0006189))
no description (db=Gene3D db_id=G3DSA:3.40.50.7700 from=2 to=149 evalue=8.4e-28 interpro_id=IPR000031 interpro_description=1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase GO=Molecular Function: phosphoribosylaminoimidazole carboxylase activity (GO:0004638), Biological Process: 'de novo' IMP biosynthetic process (GO:0006189))
ACD51_30_13
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(10923..11891)
DNA (969bp) protein (323aa)
Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EZV7_SORC5 (db=UNIREF evalue=4.0e-95 bit_score=351.0 identity=50.78 coverage=98.7616099071207)
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
SAICAR_SYNTHETASE_2 (db=PatternScan db_id=PS01058 from=207 to=215 evalue=0.0 interpro_id=IPR018236 interpro_description=SAICAR synthetase, conserved site GO=Molecular Function: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity (GO:0004639), Biological Process: purine nucleotide biosynthetic process (GO:0006164))
ACD51_30_14
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

12058..13356
DNA (1299bp) protein (433aa)
Adenylosuccinate synthetase n=2 Tax=Oryza sativa RepID=Q851S8_ORYSJ (db=UNIREF evalue=3.0e-129 bit_score=465.0 identity=51.27 coverage=98.6143187066975)
purA; adenylosuccinate synthetase (EC:6.3.4.4)
purA; adenylosuccinate synthetase (EC:6.3.4.4)
ADENYLOSUCCIN_SYN_1 (db=PatternScan db_id=PS01266 from=16 to=23 evalue=0.0 interpro_id=IPR018220 interpro_description=Adenylosuccinate synthase, active site GO=Molecular Function: adenylosuccinate synthase activity (GO:0004019), Molecular Function: GTP binding (GO:0005525), Biological Process: purine nucleotide biosynthetic process (GO:0006164))
ACD51_30_15
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(13371..14288)
DNA (918bp) protein (306aa)
coiled-coil (db=Coil db_id=coil from=198 to=226 evalue=NA)
seg (db=Seg db_id=seg from=74 to=87)
seg (db=Seg db_id=seg from=255 to=270)
coiled-coil 198..226 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_30_16
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

14394..17084
DNA (2691bp) protein (897aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=uncultured archaeon GZfos11A10 RepID=Q64EJ7_9ARCH (db=UNIREF evalue=1.0e-08 bit_score=66.2 identity=27.3 coverage=35.8974358974359)
seg (db=Seg db_id=seg from=834 to=845)
seg (db=Seg db_id=seg from=667 to=732)
ACD51_30_17
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(17153..18343)
DNA (1191bp) protein (397aa)
peptidase S8/S53 subtilisin kexin sedolisin
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=28)
seg (db=Seg db_id=seg from=14 to=27)
SUBTILASE_ASP (db=PatternScan db_id=PS00136 from=163 to=174 evalue=0.0 interpro_id=IPR022398 interpro_description=Peptidase S8/S53, subtilisin, active site)
ACD51_30_18
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists


comp(18423..21032)
DNA (2610bp) protein (870aa)
valyl-tRNA synthetase (EC:6.1.1.9)
valyl-tRNA synthetase (EC:6.1.1.9)
Valyl-tRNA synthetase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEY7_9FIRM (db=UNIREF evalue=0.0 bit_score=863.0 identity=46.64 coverage=99.6551724137931)
coiled-coil (db=Coil db_id=coil from=845 to=870 evalue=NA)
ACD51_30_19
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

21193..21663
DNA (471bp) protein (157aa)
21193..21663 + (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_30_20
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

21762..22670
DNA (909bp) protein (303aa)
quinolinate synthetase
coiled-coil (db=Coil db_id=coil from=261 to=282 evalue=NA)
NadA (db=HMMPfam db_id=PF02445 from=7 to=297 evalue=6.8e-112 interpro_id=IPR003473 interpro_description=Quinolinate synthetase A GO=Molecular Function: quinolinate synthetase A activity (GO:0008987), Biological Process: NAD biosynthetic process (GO:0009435))
nadA: quinolinate synthetase complex, A subu (db=HMMTigr db_id=TIGR00550 from=1 to=299 evalue=2.2e-108 interpro_id=IPR003473 interpro_description=Quinolinate synthetase A GO=Molecular Function: quinolinate synthetase A activity (GO:0008987), Biological Process: NAD biosynthetic process (GO:0009435))
ACD51_30_21
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

22663..23166
DNA (504bp) protein (168aa)
Nicotinate-nucleotide pyrophosphorylase n=2 Tax=Clostridiales RepID=D4MYE4_9FIRM (db=UNIREF evalue=2.0e-22 bit_score=108.0 identity=41.18 coverage=86.3095238095238)
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Nicotinate/Quinolinate PRTase N-terminal domain-like (db=superfamily db_id=SSF54675 from=8 to=123 evalue=2.0e-25)
no description (db=Gene3D db_id=G3DSA:3.90.1170.20 from=13 to=136 evalue=1.0e-22)
Displaying 21 items

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