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ACD51_35

Alias: ACD51_23433.18931.9

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD51_35_1
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(3..926)
DNA (924bp) protein (308aa)
seg (db=Seg db_id=seg from=88 to=98)
Uncharacterized protein (Fragment) Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_35_2
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(1073..2320)
DNA (1248bp) protein (416aa)
NusA antitermination factor
NusA antitermination factor
Transcription termination factor NusA n=1 Tax=Thermincola sp. JR RepID=D5XF10_9FIRM (db=UNIREF evalue=2.0e-91 bit_score=340.0 identity=50.87 coverage=82.2115384615385)
seg (db=Seg db_id=seg from=346 to=357)
ACD51_35_3
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

2592..2843
DNA (252bp) protein (84aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=61 to=78)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=56)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
ACD51_35_4
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(2830..3504)
DNA (675bp) protein (225aa)
2830..3504 - (rbs_motif=None rbs_spacer=None)
Fe-S oxidoreductase; K06936 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_35_5
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(3566..4351)
DNA (786bp) protein (262aa)
hypothetical protein
seg (db=Seg db_id=seg from=235 to=248)
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=18 to=226 evalue=6.0e-07)
Fe-S oxidoreductase; K06936 alias=ACD51_C00035G00005,ACD51_23433.18931.9G0005,ACD51_23433.18931.9_5 id=73692 tax=ACD51 species=Methanopyrus kandleri genus=Methanopyrus taxon_order=Methanopyrales taxon_class=Methanopyri phylum=Euryarchaeota organism_group=PER organism_desc=PER
ACD51_35_6
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

4475..5221
DNA (747bp) protein (249aa)
Transcriptional regulator, TrmB
TrmB (db=HMMPfam db_id=PF01978 from=7 to=72 evalue=2.5e-11 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=7 to=109 evalue=2.1e-06)
transcriptional regulator, TrmB Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_35_7
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(5207..5719)
DNA (513bp) protein (171aa)
recX; recombination regulator RecX; K03565 regulatory protein (db=KEGG evalue=4.0e-09 bit_score=63.9 identity=30.63 coverage=78.9473684210526)
RecX (db=HMMPfam db_id=PF02631 from=50 to=165 evalue=3.8e-17 interpro_id=IPR003783 interpro_description=Regulatory protein RecX GO=Biological Process: regulation of DNA repair (GO:0006282))
RecX (db=HAMAP db_id=MF_01114 from=2 to=170 evalue=12.666)
recX; recombination regulator RecX; K03565 regulatory protein alias=ACD51_C00035G00007,ACD51_23433.18931.9G0007,ACD51_23433.18931.9_7 id=73693 tax=ACD51 species=Pelodictyon luteolum genus=Pelodictyon taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi organism_group=PER organism_desc=PER
ACD51_35_8
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists


comp(5773..6858)
DNA (1086bp) protein (362aa)
recA; multifunctional SOS repair factor
recA; multifunctional SOS repair factor
RecA protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KTF3_9BACT (db=UNIREF evalue=4.0e-124 bit_score=448.0 identity=70.75 coverage=91.1602209944751)
seg (db=Seg db_id=seg from=249 to=258)
ACD51_35_9
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

6887..7072
DNA (186bp) protein (62aa)
6887..7072 + (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_35_10
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(7160..7399)
DNA (240bp) protein (80aa)
7160..7399 - (rbs_motif=TAA rbs_spacer=8bp)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_35_11

Not on your lists

comp(7470..8249)
DNA (780bp) protein (260aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=125 to=147)
transmembrane_regions (db=TMHMM db_id=tmhmm from=19 to=36)
transmembrane_regions (db=TMHMM db_id=tmhmm from=56 to=78)
transmembrane_regions (db=TMHMM db_id=tmhmm from=90 to=112)
ACD51_35_12

Not on your lists

8574..9470
DNA (897bp) protein (299aa)
ppnK; polyphosphate/ATP-dependent NAD kinase
NAD kinase (db=superfamily db_id=SSF111331 from=10 to=297 evalue=1.3e-81 interpro_id=IPR016064 interpro_description=ATP-NAD kinase, PpnK-type GO=Molecular Function: NAD+ kinase activity (GO:0003951), Biological Process: metabolic process (GO:0008152))
POLY(P)/ATP NAD KINASE (db=HMMPanther db_id=PTHR20275 from=8 to=298 evalue=8.0e-67 interpro_id=IPR002504 interpro_description=ATP-NAD/AcoX kinase GO=Molecular Function: NAD+ kinase activity (GO:0003951), Biological Process: metabolic process (GO:0008152))
NAD_kinase (db=HMMPfam db_id=PF01513 from=12 to=280 evalue=5.3e-57 interpro_id=IPR002504 interpro_description=ATP-NAD/AcoX kinase GO=Molecular Function: NAD+ kinase activity (GO:0003951), Biological Process: metabolic process (GO:0008152))
ACD51_35_13

Not on your lists

comp(9483..10568)
DNA (1086bp) protein (362aa)
Phosphoribosylformylglycinamidine cyclo-ligase
PHOSPHORIBOSYLAMINE-GLYCINE LIGASE-RELATED (db=HMMPanther db_id=PTHR10520 from=3 to=361 evalue=6.3e-40)
PurM C-terminal domain-like (db=superfamily db_id=SSF56042 from=184 to=361 evalue=2.0e-34 interpro_id=IPR010918 interpro_description=AIR synthase related protein, C-terminal)
no description (db=Gene3D db_id=G3DSA:3.90.650.10 from=184 to=358 evalue=6.5e-31)
ACD51_35_14

Not on your lists

comp(10704..11510)
DNA (807bp) protein (269aa)
purQ; Phosphoribosylformylglycinamidine synthase I (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase I (db=HMMPIR db_id=PIRSF001586 from=3 to=268 evalue=6.7e-113 interpro_id=IPR010075 interpro_description=Phosphoribosylformylglycinamidine synthase I GO=Molecular Function: phosphoribosylformylglycinamidine synthase activity (GO:0004642), Cellular Component: cytoplasm (GO:0005737), Biological Process: 'de novo' IMP biosynthetic process (GO:0006189))
Class I glutamine amidotransferase-like (db=superfamily db_id=SSF52317 from=1 to=267 evalue=1.1e-71)
PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE (db=HMMPanther db_id=PTHR10099 from=3 to=267 evalue=2.0e-62)
ACD51_35_15
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(11515..14457)
DNA (2943bp) protein (981aa)
Phosphoribosylformylglycinamidine synthase n=4 Tax=Methanococcus maripaludis RepID=A4G009_METM5 (db=UNIREF evalue=0.0 bit_score=1111.0 identity=55.01 coverage=99.4903160040775)
purL; phosphoribosylformylglycinamidine synthase II (EC:6.3.5.3)
purL; phosphoribosylformylglycinamidine synthase II (EC:6.3.5.3)
PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE (db=HMMPanther db_id=PTHR10099 from=242 to=977 evalue=8.0e-103)
ACD51_35_16
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(14582..15760)
DNA (1179bp) protein (393aa)
hypothetical protein
S-layer domain protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D5B0_PAESJ (db=UNIREF evalue=2.0e-15 bit_score=87.4 identity=32.28 coverage=44.529262086514)
seg (db=Seg db_id=seg from=5 to=20)
SLH (db=HMMPfam db_id=PF00395 from=26 to=68 evalue=1.6e-09 interpro_id=IPR001119 interpro_description=S-layer homology domain)
ACD51_35_17
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(15959..17203)
DNA (1245bp) protein (415aa)
Glutamate dehydrogenase n=1 Tax=Methanococcoides burtonii DSM 6242 RepID=Q12UM4_METBU (db=UNIREF evalue=6.0e-122 bit_score=441.0 identity=51.46 coverage=98.0722891566265)
Glu/Leu/Phe/Val dehydrogenase
Glu/Leu/Phe/Val dehydrogenase
GLFV_DEHYDROGENASE (db=PatternScan db_id=PS00074 from=96 to=109 evalue=0.0 interpro_id=IPR006095 interpro_description=Glutamate/phenylalanine/leucine/valine dehydrogenase GO=Biological Process: cellular amino acid metabolic process (GO:0006520), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
ACD51_35_18

Not on your lists

comp(17342..17941)
DNA (600bp) protein (200aa)
seg (db=Seg db_id=seg from=124 to=145)
Uncharacterized protein {ECO:0000313|EMBL:EKD64026.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD51_35_19
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(18276..18377)
DNA (102bp) protein (34aa)
seg (db=Seg db_id=seg from=17 to=32)
seg 17..32 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_35_20
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(18317..18862)
DNA (546bp) protein (182aa)
seg (db=Seg db_id=seg from=70 to=89)
seg (db=Seg db_id=seg from=10 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=160 to=177)
transmembrane_regions (db=TMHMM db_id=tmhmm from=109 to=131)
Displaying 20 items

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