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ACD51_38

Alias: ACD51_41693.28353.9

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD51_38_1

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255..767
DNA (513bp) protein (171aa)
hypothetical protein
UPF0290 protein Mevan_1000 n=1 Tax=Methanococcus vannielii SB RepID=Y1000_METVS (db=UNIREF evalue=4.0e-11 bit_score=70.5 identity=38.64 coverage=97.6608187134503)
transmembrane_regions (db=TMHMM db_id=tmhmm from=74 to=96)
transmembrane_regions (db=TMHMM db_id=tmhmm from=45 to=62)
ACD51_38_2
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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comp(708..2597)
DNA (1890bp) protein (630aa)
hypothetical protein
hypothetical protein
PabB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJR9_DESAH (db=UNIREF evalue=3.0e-85 bit_score=320.0 identity=36.66 coverage=79.8412698412698)
AMINOBENZOATE/ANTHRANILATE SYNTHASE (db=HMMPanther db_id=PTHR11236 from=112 to=391 evalue=3.2e-128 interpro_id=IPR005801 interpro_description=ADC synthase GO=Biological Process: biosynthetic process (GO:0009058))
ACD51_38_3
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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comp(2572..3153)
DNA (582bp) protein (194aa)
trpG; anthranilate synthase component II
GMP SYNTHASE-RELATED (db=HMMPanther db_id=PTHR11922 from=5 to=192 evalue=7.5e-91)
trpG_papA: glutamine amidotransferase of a (db=HMMTigr db_id=TIGR00566 from=5 to=187 evalue=1.4e-78 interpro_id=IPR006221 interpro_description=Anthranilate synthase, glutamine amidotransferase domain GO=Molecular Function: anthranilate synthase activity (GO:0004049), Biological Process: metabolic process (GO:0008152))
Class I glutamine amidotransferase-like (db=superfamily db_id=SSF52317 from=3 to=188 evalue=1.8e-58)
ACD51_38_4
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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3182..3460
DNA (279bp) protein (93aa)
coiled-coil (db=Coil db_id=coil from=3 to=24 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=51)
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=77)
coiled-coil 3..24 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_38_5
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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comp(3432..3896)
DNA (465bp) protein (155aa)
benzodiazepine receptor TspO
transmembrane_regions (db=TMHMM db_id=tmhmm from=101 to=123)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
transmembrane_regions (db=TMHMM db_id=tmhmm from=78 to=97)
ACD51_38_6
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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3991..4410
DNA (420bp) protein (140aa)
hypothetical protein
AF0104/ALDC/Ptd012-like (db=superfamily db_id=SSF117856 from=1 to=137 evalue=3.6e-34)
DUF296 (db=HMMPfam db_id=PF03479 from=9 to=122 evalue=5.3e-28 interpro_id=IPR005175 interpro_description=Protein of unknown function DUF296)
hypothetical protein; K06934 alias=ACD51_C00038G00006,ACD51_41693.28353.9G0006,ACD51_41693.28353.9_6 id=73730 tax=ACD51 species=Petrotoga mobilis genus=Petrotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae organism_group=PER organism_desc=PER
ACD51_38_7
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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4453..4785
DNA (333bp) protein (111aa)
4453..4785 + (rbs_motif=TAA rbs_spacer=9bp)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_38_8
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(4992..5408)
DNA (417bp) protein (139aa)
RNP-1 like RNA-binding protein
seg (db=Seg db_id=seg from=21 to=32)
seg (db=Seg db_id=seg from=85 to=104)
GLYCINE-RICH RNA-BINDING PROTEIN (db=HMMPanther db_id=PTHR10432:SF31 from=4 to=84 evalue=1.7e-33 interpro_id=IPR015465 interpro_description=RNA recognition motif, glycine rich protein)
ACD51_38_9
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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comp(5609..5941)
DNA (333bp) protein (111aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=86 to=108)
transmembrane_regions (db=TMHMM db_id=tmhmm from=57 to=79)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=47)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
ACD51_38_10
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(5980..6210)
DNA (231bp) protein (77aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=68)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_38_11
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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comp(6309..6548)
DNA (240bp) protein (80aa)
hypothetical protein
seg (db=Seg db_id=seg from=65 to=76)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
ACD51_38_12
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(6975..8186)
DNA (1212bp) protein (404aa)
ctpA; carboxy-terminal-processing protease (EC:3.4.21.102)
seg (db=Seg db_id=seg from=380 to=391)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
prc: C-terminal processing peptidase (db=HMMTigr db_id=TIGR00225 from=66 to=399 evalue=3.2e-90 interpro_id=IPR004447 interpro_description=Peptidase S41A, C-terminal peptidase GO=Biological Process: proteolysis (GO:0006508), Molecular Function: serine-type peptidase activity (GO:0008236))
ACD51_38_13

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comp(8231..9022)
DNA (792bp) protein (264aa)
metallophosphoesterase
no description (db=Gene3D db_id=G3DSA:3.60.21.30 from=1 to=260 evalue=6.7e-84)
Metallo-dependent phosphatases (db=superfamily db_id=SSF56300 from=1 to=262 evalue=1.3e-71)
metallophosphoesterase; K09769 hypothetical protein alias=ACD51_C00038G00013,ACD51_41693.28353.9G0013,ACD51_41693.28353.9_13 id=73720 tax=ACD51 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=PER organism_desc=PER
ACD51_38_14
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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comp(9047..9952)
DNA (906bp) protein (302aa)
9047..9952 - (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_38_15

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comp(10244..12448)
DNA (2205bp) protein (735aa)
ATP-dependent DNA helicase PcrA
ATP-dependent DNA helicase PcrA
ATP-dependent DNA helicase PcrA n=1 Tax=Thermincola sp. JR RepID=D5XD67_9FIRM (db=UNIREF evalue=0.0 bit_score=655.0 identity=48.09 coverage=98.7755102040816)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=5 to=659 evalue=7.3e-172)
ACD51_38_16

Not on your lists

12578..14455
DNA (1878bp) protein (626aa)
hypothetical protein
hypothetical protein BacD2_10692 n=1 Tax=Bacteroides sp. D2 RepID=UPI0001BC7D35 (db=UNIREF evalue=5.0e-12 bit_score=76.6 identity=25.56 coverage=40.7348242811502)
transmembrane_regions (db=TMHMM db_id=tmhmm from=408 to=430)
transmembrane_regions (db=TMHMM db_id=tmhmm from=172 to=191)
ACD51_38_17

Not on your lists

comp(14508..14930)
DNA (423bp) protein (141aa)
seg (db=Seg db_id=seg from=40 to=56)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
Uncharacterized protein {ECO:0000313|EMBL:EKD63762.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD51_38_18

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comp(15038..16201)
DNA (1164bp) protein (388aa)
ErfK/YbiS/YcfS/YnhG n=1 Tax=Cylindrospermopsis raciborskii CS-505 RepID=D4TJQ4_9NOST (db=UNIREF evalue=6.0e-14 bit_score=82.4 identity=37.5 coverage=29.639175257732)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=248 to=259)
ACD51_38_19

Not on your lists

16429..19827
DNA (3399bp) protein (1133aa)
Possible S-layer protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BFU4_9BACI (db=UNIREF evalue=3.0e-17 bit_score=95.1 identity=31.77 coverage=15.2691968225949)
hypothetical protein
seg (db=Seg db_id=seg from=782 to=813)
seg (db=Seg db_id=seg from=828 to=871)
C and Y rich!! Jill Banfield (11/15/12)
blasted this, really bad alignment. only aligns along SLH domain. removing from plant degradation list. kelly wrighton (11/15/12)
ACD51_38_20

Not on your lists

20099..20527
DNA (429bp) protein (143aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
Uncharacterized protein {ECO:0000313|EMBL:EKD63749.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD51_38_21
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(20366..21490)
DNA (1125bp) protein (375aa)
deoxyguanosinetriphosphate triphosphohydrolase-like protein
dGTP_triPase: putative dGTPase (db=HMMTigr db_id=TIGR01353 from=30 to=370 evalue=8.5e-59 interpro_id=IPR006261 interpro_description=Deoxyguanosinetriphosphate triphosphohydrolase GO=Molecular Function: magnesium ion binding (GO:0000287), Molecular Function: dGTPase activity (GO:0008832), Biological Process: GTP metabolic process (GO:0046039))
HD-domain/PDEase-like (db=superfamily db_id=SSF109604 from=19 to=361 evalue=2.9e-58)
HD (db=HMMPfam db_id=PF01966 from=68 to=192 evalue=6.3e-11 interpro_id=IPR006674 interpro_description=Metal-dependent phosphohydrolase, HD subdomain)
ACD51_38_22
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

21537..23306
DNA (1770bp) protein (590aa)
putative secreted protein
seg (db=Seg db_id=seg from=108 to=118)
seg (db=Seg db_id=seg from=233 to=247)
SLH (db=HMMPfam db_id=PF00395 from=411 to=451 evalue=1.7e-11 interpro_id=IPR001119 interpro_description=S-layer homology domain)
ACD51_38_23
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

23510..24424
DNA (915bp) protein (305aa)
Tyrosine recombinase XerD
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=109 to=302 evalue=1.2e-55 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=114 to=300 evalue=2.2e-52 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
Phage_integrase (db=HMMPfam db_id=PF00589 from=115 to=293 evalue=4.1e-47 interpro_id=IPR002104 interpro_description=Integrase, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
ACD51_38_24
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

24467..25183
DNA (717bp) protein (239aa)
cell division ATP-binding protein
seg (db=Seg db_id=seg from=228 to=238)
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=137 to=151 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
FILAMENTATION TEMPERATURE SENSITIVE CELL DIVISION PROTEIN FTSE (db=HMMPanther db_id=PTHR19222:SF36 from=2 to=222 evalue=6.1e-96)
ACD51_38_25
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

25269..26351
DNA (1083bp) protein (361aa)
DNA protecting protein DprA
dprA: DNA protecting protein DprA (db=HMMTigr db_id=TIGR00732 from=72 to=292 evalue=1.9e-85 interpro_id=IPR003488 interpro_description=DNA recombination-mediator protein A GO=Biological Process: DNA mediated transformation (GO:0009294))
DNA_processg_A (db=HMMPfam db_id=PF02481 from=75 to=281 evalue=1.2e-78 interpro_id=IPR003488 interpro_description=DNA recombination-mediator protein A GO=Biological Process: DNA mediated transformation (GO:0009294))
MoCo carrier protein-like (db=superfamily db_id=SSF102405 from=83 to=294 evalue=6.6e-34)
ACD51_38_26
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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comp(26424..28124)
DNA (1701bp) protein (567aa)
pilB2; type IV-A pilus assembly ATPase PilB
Putative type II secretion system protein E n=1 Tax=uncultured bacterium RepID=C3U0N5_9BACT (db=UNIREF evalue=1.0e-99 bit_score=367.0 identity=38.7 coverage=95.5908289241623)
seg (db=Seg db_id=seg from=391 to=400)
ACD51_38_27
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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comp(28240..28389)
DNA (150bp) protein (50aa)
seg (db=Seg db_id=seg from=8 to=22)
Uncharacterized protein (Fragment) Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
Displaying 27 items

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