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ACD51_47

Alias: ACD51_31757.29820.10

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD51_47_1
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

3..107
DNA (105bp) protein (35aa)
DNA POLYMERASE TYPE-X FAMILY MEMBER (db=HMMPanther db_id=PTHR11276 from=1 to=34 evalue=7.1e-07)
DNA POLYMERASE TYPE-X FAMILY MEMBER (db=HMMPanther db_id=PTHR11276:SF1 from=1 to=34 evalue=7.1e-07)
DNA-binding/PHP domain-containing protein; K02347 DNA polymerase (family X) Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_47_2
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

100..810
DNA (711bp) protein (237aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G3V1_9FIRM (db=UNIREF evalue=2.0e-34 bit_score=149.0 identity=35.8 coverage=99.1561181434599)
hypothetical protein
Methyltrans_RNA (db=HMMPfam db_id=PF04452 from=17 to=233 evalue=3.2e-53 interpro_id=IPR006700 interpro_description=Ribosomal RNA small subunit methyltransferase E GO=Biological Process: rRNA processing (GO:0006364), Molecular Function: methyltransferase activity (GO:0008168))
TIGR00046: RNA methyltransferase, RsmE fami (db=HMMTigr db_id=TIGR00046 from=1 to=231 evalue=1.7e-40 interpro_id=IPR006700 interpro_description=Ribosomal RNA small subunit methyltransferase E GO=Biological Process: rRNA processing (GO:0006364), Molecular Function: methyltransferase activity (GO:0008168))
ACD51_47_3
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

942..1520
DNA (579bp) protein (193aa)
seg (db=Seg db_id=seg from=149 to=191)
seg (db=Seg db_id=seg from=6 to=19)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=20 evalue=6.0)
seg 6..19 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_47_4
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

1607..2248
DNA (642bp) protein (214aa)
methyltransferase GidB
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C860_9FIRM (db=UNIREF evalue=1.0e-21 bit_score=106.0 identity=38.46 coverage=96.7289719626168)
seg (db=Seg db_id=seg from=121 to=134)
seg (db=Seg db_id=seg from=51 to=65)
ACD51_47_5
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

2226..2867
DNA (642bp) protein (214aa)
ribosomal RNA methyltransferase RrmJ/FtsJ
23S ribosomal RNA methyltransferase (db=HMMPIR db_id=PIRSF005461 from=8 to=208 evalue=4.1e-70 interpro_id=IPR016448 interpro_description=23S ribosomal RNA methyltransferase GO=Biological Process: rRNA processing (GO:0006364), Molecular Function: RNA methyltransferase activity (GO:0008173))
RIBOSOMAL RNA METHYLTRANSFERASE (db=HMMPanther db_id=PTHR10920 from=16 to=203 evalue=3.9e-56 interpro_id=IPR015507 interpro_description=Ribosomal RNA methyltransferase J GO=Molecular Function: methyltransferase activity (GO:0008168), Biological Process: rRNA methylation (GO:0031167))
FtsJ (db=HMMPfam db_id=PF01728 from=27 to=205 evalue=4.5e-48 interpro_id=IPR002877 interpro_description=Ribosomal RNA methyltransferase RrmJ/FtsJ GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: methyltransferase activity (GO:0008168), Biological Process: methylation (GO:0032259))
ACD51_47_6
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(4414..6426)
DNA (2013bp) protein (671aa)
cell surface protein
seg (db=Seg db_id=seg from=461 to=477)
seg (db=Seg db_id=seg from=260 to=272)
seg (db=Seg db_id=seg from=74 to=93)
ACD51_47_7
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(6459..6773)
DNA (315bp) protein (105aa)
seg (db=Seg db_id=seg from=88 to=104)
seg (db=Seg db_id=seg from=8 to=83)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_47_8

Not on your lists

comp(6849..11552)
DNA (4704bp) protein (1568aa)
PKD domain containing protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=1541 to=1563)
transmembrane_regions (db=TMHMM db_id=tmhmm from=138 to=160)
transmembrane_regions (db=TMHMM db_id=tmhmm from=103 to=125)
ACD51_47_9

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comp(11607..12557)
DNA (951bp) protein (317aa)
seg (db=Seg db_id=seg from=289 to=306)
seg (db=Seg db_id=seg from=8 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=288 to=310)
transmembrane_regions (db=TMHMM db_id=tmhmm from=253 to=275)
ACD51_47_10
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(12566..13504)
DNA (939bp) protein (313aa)
seg (db=Seg db_id=seg from=115 to=126)
seg (db=Seg db_id=seg from=15 to=30)
transmembrane_regions (db=TMHMM db_id=tmhmm from=286 to=308)
transmembrane_regions (db=TMHMM db_id=tmhmm from=251 to=273)
ACD51_47_11
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

13735..13932
DNA (198bp) protein (66aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=51)
SECE_SEC61G (db=PatternScan db_id=PS01067 from=7 to=35 evalue=0.0 interpro_id=IPR001901 interpro_description=Protein secE/sec61-gamma protein GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
SecE (db=HMMPfam db_id=PF00584 from=3 to=58 evalue=1.8e-16 interpro_id=IPR001901 interpro_description=Protein secE/sec61-gamma protein GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
secE_bact: preprotein translocase, SecE sub (db=HMMTigr db_id=TIGR00964 from=4 to=60 evalue=2.0e-14 interpro_id=IPR005807 interpro_description=SecE subunit of protein translocation complex GO=Biological Process: protein secretion (GO:0009306), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: integral to membrane (GO:0016021))
ACD51_47_12
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

13955..14500
DNA (546bp) protein (182aa)
transcription termination/antitermination factor NusG
NUSG (db=PatternScan db_id=PS01014 from=164 to=173 evalue=0.0 interpro_id=IPR015869 interpro_description=Transcription antitermination protein, NusG, bacteria, conserved site)
nusG: transcription termination/antiterminat (db=HMMTigr db_id=TIGR00922 from=12 to=181 evalue=1.0e-74 interpro_id=IPR001062 interpro_description=Transcription antitermination protein, NusG GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=HMMSmart db_id=SM00738 from=9 to=117 evalue=1.7e-38 interpro_id=IPR006645 interpro_description=Transcription antitermination protein, NusG, N-terminal GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter (GO:0032968))
ACD51_47_13
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

14512..15114
DNA (603bp) protein (201aa)
14512..15114 + (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_47_14
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists


15282..15707
DNA (426bp) protein (142aa)
50S ribosomal protein L11
50S ribosomal protein L11 n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GDT0_9FIRM (db=UNIREF evalue=2.0e-45 bit_score=184.0 identity=68.79 coverage=98.5915492957747)
seg (db=Seg db_id=seg from=113 to=124)
RIBOSOMAL_L11 (db=PatternScan db_id=PS00359 from=126 to=141 evalue=0.0 interpro_id=IPR020785 interpro_description=Ribosomal protein L11, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD51_47_15
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

15791..16171
DNA (381bp) protein (127aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
transmembrane_regions 15..37 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_47_16

Not on your lists


16233..16931
DNA (699bp) protein (233aa)
50S ribosomal protein L1
rplA_bact: ribosomal protein L1 (db=HMMTigr db_id=TIGR01169 from=2 to=228 evalue=4.0e-119 interpro_id=IPR005878 interpro_description=Ribosomal protein L1, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal protein, L1p/L1a/L10e/organellar L1 types (db=HMMPIR db_id=PIRSF002155 from=1 to=226 evalue=9.5e-86 interpro_id=IPR002143 interpro_description=Ribosomal protein L1 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))
50S RIBOSOMAL PROTEIN L1P (db=HMMPanther db_id=PTHR23105:SF5 from=20 to=224 evalue=2.0e-77)
ACD51_47_17
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

16986..17615
DNA (630bp) protein (210aa)
beta-lactamase domain-containing protein
Metallo-hydrolase/oxidoreductase (db=superfamily db_id=SSF56281 from=19 to=195 evalue=3.4e-32)
no description (db=Gene3D db_id=G3DSA:3.60.15.10 from=29 to=152 evalue=2.3e-18)
no description (db=HMMSmart db_id=SM00849 from=25 to=190 evalue=2.8e-17 interpro_id=IPR001279 interpro_description=Beta-lactamase-like GO=Molecular Function: hydrolase activity (GO:0016787))
ACD51_47_18
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

17642..18079
DNA (438bp) protein (146aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
dUTPase-like (db=superfamily db_id=SSF51283 from=1 to=144 evalue=2.5e-37)
no description (db=Gene3D db_id=G3DSA:2.70.40.10 from=1 to=142 evalue=5.6e-35)
dut: dUTP diphosphatase (db=HMMTigr db_id=TIGR00576 from=2 to=143 evalue=5.8e-35 interpro_id=IPR008181 interpro_description=DeoxyUTP pyrophosphatase domain, subfamily 1, GO=Molecular Function: dUTP diphosphatase activity (GO:0004170), Biological Process: dUTP metabolic process (GO:0046080))
ACD51_47_19
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

18091..18675
DNA (585bp) protein (195aa)
thymidylate kinase
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=2 to=188 evalue=8.4e-18)
Thymidylate_kin (db=HMMPfam db_id=PF02223 from=7 to=177 evalue=3.3e-14 interpro_id=IPR000062 interpro_description=Thymidylate kinase-like GO=Molecular Function: ATP binding (GO:0005524))
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=165 evalue=1.6e-13)
ACD51_47_20
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(18712..20004)
DNA (1293bp) protein (431aa)
seg (db=Seg db_id=seg from=141 to=149)
seg 141..149 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_47_21

Not on your lists

20127..20984
DNA (858bp) protein (286aa)
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9)
seg (db=Seg db_id=seg from=220 to=238)
THF_DHG_CYH_2 (db=PatternScan db_id=PS00767 from=260 to=268 evalue=0.0 interpro_id=IPR020867 interpro_description=Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: folic acid and derivative biosynthetic process (GO:0009396))
METHYLENETETRAHYDROFOLATE DEHYDROGENASE FAMILY MEMBER (db=HMMPanther db_id=PTHR10025 from=13 to=284 evalue=4.9e-133)
ACD51_47_22
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

20996..22498
DNA (1503bp) protein (501aa)
Amidophosphoribosyltransferase n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SJC5_HAHCH (db=UNIREF evalue=2.0e-136 bit_score=489.0 identity=51.19 coverage=99.4011976047904)
purF; amidophosphoribosyltransferase (EC:2.4.2.14)
purF; amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase (db=HMMPIR db_id=PIRSF000485 from=1 to=475 evalue=1.0e-183 interpro_id=IPR005854 interpro_description=Amidophosphoribosyl transferase GO=Molecular Function: amidophosphoribosyltransferase activity (GO:0004044), Biological Process: purine base biosynthetic process (GO:0009113))
ACD51_47_23

Not on your lists

22622..23932
DNA (1311bp) protein (437aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LR97_SYNAS (db=UNIREF evalue=7.0e-122 bit_score=441.0 identity=52.27 coverage=99.0846681922197)
seg (db=Seg db_id=seg from=145 to=159)
ACD51_47_24
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(23929..24192)
DNA (264bp) protein (88aa)
prephenate dehydratase (EC:4.2.1.51)
seg (db=Seg db_id=seg from=70 to=83)
PREPHENATE_DEHYDR_2 (db=PatternScan db_id=PS00858 from=39 to=46 evalue=0.0 interpro_id=IPR018528 interpro_description=Prephenate dehydratase, conserved site GO=Molecular Function: prephenate dehydratase activity (GO:0004664), Biological Process: L-phenylalanine biosynthetic process (GO:0009094))
PREPHENATE DEHYDRATASE (P PROTEIN) (db=HMMPanther db_id=PTHR21022 from=5 to=87 evalue=1.1e-17)
ACD51_47_25
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(25654..26073)
DNA (420bp) protein (140aa)
seg (db=Seg db_id=seg from=118 to=139)
seg (db=Seg db_id=seg from=92 to=109)
seg (db=Seg db_id=seg from=8 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
ACD51_47_26
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(26177..26755)
DNA (579bp) protein (193aa)
Maf protein (Fragment) n=1 Tax=Heliobacillus mobilis RepID=Q8GDU9_HELMO (db=UNIREF evalue=7.0e-38 bit_score=159.0 identity=40.62 coverage=97.4093264248705)
septum formation protein Maf
Maf (db=HMMPfam db_id=PF02545 from=1 to=188 evalue=2.5e-50 interpro_id=IPR003697 interpro_description=Maf-like protein GO=Cellular Component: cytoplasm (GO:0005737))
ITPase-like (db=superfamily db_id=SSF52972 from=1 to=187 evalue=5.0e-44)
ACD51_47_27
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(26697..27515)
DNA (819bp) protein (273aa)
seg (db=Seg db_id=seg from=61 to=82)
transmembrane_regions (db=TMHMM db_id=tmhmm from=199 to=221)
seg (db=Seg db_id=seg from=204 to=215)
Carbohydrate-binding domain (db=superfamily db_id=SSF49384 from=21 to=175 evalue=2.9e-06 interpro_id=IPR008965 interpro_description=Carbohydrate-binding GO=Molecular Function: carbohydrate binding (GO:0030246))
ACD51_47_28

Not on your lists

28476..28853
DNA (378bp) protein (126aa)
seg (db=Seg db_id=seg from=48 to=61)
seg (db=Seg db_id=seg from=2 to=15)
Uncharacterized protein {ECO:0000313|EMBL:EKD63882.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD51_47_29
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists


29256..29537
DNA (282bp) protein (94aa)
seg (db=Seg db_id=seg from=35 to=49)
Ribosomal_S20p (db=HMMPfam db_id=PF01649 from=4 to=83 evalue=5.1e-16 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S20 (db=superfamily db_id=SSF46992 from=3 to=86 evalue=3.6e-14 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:1.20.58.110 from=5 to=84 evalue=1.0e-13 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying 29 items

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