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ACD51_52

Alias: ACD51_11746.20184.10

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD51_52_1
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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1..612
DNA (612bp) protein (204aa)
apurinic endonuclease Apn1
Probable endonuclease 4 n=1 Tax=uncultured marine crenarchaeote HF4000_APKG6D9 RepID=B3T958_9ARCH (db=UNIREF evalue=2.0e-32 bit_score=142.0 identity=39.9 coverage=91.6666666666667)
AP_NUCLEASE_F2_3 (db=PatternScan db_id=PS00731 from=134 to=150 evalue=0.0 interpro_id=IPR018246 interpro_description=AP endonuclease, family 2, zinc binding site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: endonuclease activity (GO:0004519), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281), Molecular Function: zinc ion binding (GO:0008270))
AP_NUCLEASE_F2_2 (db=PatternScan db_id=PS00730 from=97 to=104 evalue=0.0 interpro_id=IPR018246 interpro_description=AP endonuclease, family 2, zinc binding site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: endonuclease activity (GO:0004519), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281), Molecular Function: zinc ion binding (GO:0008270))
ACD51_52_2
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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comp(578..952)
DNA (375bp) protein (125aa)
coiled-coil (db=Coil db_id=coil from=64 to=85 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
coiled-coil 64..85 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_52_3
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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comp(945..1886)
DNA (942bp) protein (314aa)
Lipoprotein A family protein n=1 Tax=Photobacterium angustum S14 RepID=Q1ZWJ9_PHOAS (db=UNIREF evalue=6.0e-25 bit_score=118.0 identity=57.61 coverage=28.9808917197452)
lipoprotein A
seg (db=Seg db_id=seg from=8 to=19)
rlpA: rare lipoprotein A (db=HMMTigr db_id=TIGR00413 from=218 to=308 evalue=7.2e-35 interpro_id=IPR012997 interpro_description=Rare lipoprotein A, bacterial)
ACD51_52_4

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comp(1895..2356)
DNA (462bp) protein (154aa)
jag protein
R3H (db=HMMPfam db_id=PF01424 from=97 to=151 evalue=1.5e-07 interpro_id=IPR001374 interpro_description=Single-stranded nucleic acid binding R3H GO=Molecular Function: nucleic acid binding (GO:0003676))
no description (db=HMMSmart db_id=SM00393 from=70 to=153 evalue=6.6e-07 interpro_id=IPR001374 interpro_description=Single-stranded nucleic acid binding R3H GO=Molecular Function: nucleic acid binding (GO:0003676))
R3H (db=ProfileScan db_id=PS51061 from=86 to=153 evalue=13.949 interpro_id=IPR001374 interpro_description=Single-stranded nucleic acid binding R3H GO=Molecular Function: nucleic acid binding (GO:0003676))
ACD51_52_5

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comp(2394..3632)
DNA (1239bp) protein (413aa)
preprotein translocase subunit YidC
seg (db=Seg db_id=seg from=181 to=197)
transmembrane_regions (db=TMHMM db_id=tmhmm from=175 to=197)
transmembrane_regions (db=TMHMM db_id=tmhmm from=358 to=380)
ACD51_52_6
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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comp(3629..3955)
DNA (327bp) protein (109aa)
seg (db=Seg db_id=seg from=45 to=54)
Ribonuclease_P (db=HMMPfam db_id=PF00825 from=4 to=108 evalue=7.1e-21 interpro_id=IPR000100 interpro_description=Ribonuclease P GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: ribonuclease P activity (GO:0004526), Biological Process: tRNA processing (GO:0008033))
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=6 to=108 evalue=3.6e-20 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
no description (db=Gene3D db_id=G3DSA:3.30.230.10 from=2 to=108 evalue=5.8e-14 interpro_id=IPR014721 interpro_description=Ribosomal protein S5 domain 2-type fold, subgroup)
ACD51_52_7
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

4345..6297
DNA (1953bp) protein (651aa)
seg (db=Seg db_id=seg from=344 to=359)
seg (db=Seg db_id=seg from=292 to=310)
seg (db=Seg db_id=seg from=212 to=221)
transmembrane_regions (db=TMHMM db_id=tmhmm from=96 to=118)
ACD51_52_8
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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6404..6865
DNA (462bp) protein (154aa)
seg (db=Seg db_id=seg from=66 to=71)
seg 66..71 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_52_9

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comp(6866..7747)
DNA (882bp) protein (294aa)
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (EC:2.7.8.6)
Bac_transf (db=HMMPfam db_id=PF02397 from=91 to=291 evalue=3.2e-65 interpro_id=IPR003362 interpro_description=Bacterial sugar transferase)
undecaprenyl-phosphate glucose phosphotransferase (EC:2.7.8.-) alias=ACD51_C00052G00009,ACD51_11746.20184.10G0009,ACD51_11746.20184.10_9 id=73875 tax=ACD51 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi organism_group=PER organism_desc=PER
Undecaprenyl-phosphate glucose phosphotransferase {ECO:0000313|EMBL:EKD64352.1}; EC=2.7.8.- {ECO:0000313|EMBL:EKD64352.1};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured b
ACD51_52_10

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8068..8271
DNA (204bp) protein (68aa)
8068..8271 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD64342.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD51_52_11

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comp(9017..9616)
DNA (600bp) protein (200aa)
hypothetical protein
TPR-domain containing protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVR3_9BACT (db=UNIREF evalue=2.0e-12 bit_score=75.5 identity=31.93 coverage=82.0)
seg (db=Seg db_id=seg from=60 to=74)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=14 to=194 evalue=1.5e-29 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
ACD51_52_12

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comp(10689..11036)
DNA (348bp) protein (116aa)
Small heat shock protein n=3 Tax=candidate division TM7 RepID=UPI00016B2686 (db=UNIREF evalue=2.0e-09 bit_score=64.7 identity=37.5 coverage=81.8965517241379)
seg (db=Seg db_id=seg from=104 to=113)
seg (db=Seg db_id=seg from=34 to=46)
HSP20-like chaperones (db=superfamily db_id=SSF49764 from=8 to=112 evalue=1.6e-27 interpro_id=IPR008978 interpro_description=HSP20-like chaperone)
ACD51_52_13
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(11045..12892)
DNA (1848bp) protein (616aa)
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent metalloprotease FtsH n=1 Tax=Ammonifex degensii KC4 RepID=C9RA08_AMMDK (db=UNIREF evalue=4.0e-166 bit_score=588.0 identity=52.13 coverage=94.1558441558442)
coiled-coil (db=Coil db_id=coil from=375 to=396 evalue=NA)
ACD51_52_14
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(12948..14156)
DNA (1209bp) protein (403aa)
tRNA(Ile)-lysidine synthase
seg (db=Seg db_id=seg from=11 to=27)
seg (db=Seg db_id=seg from=124 to=137)
lysidine_TilS_N: tRNA(Ile)-lysidine s (db=HMMTigr db_id=TIGR02432 from=25 to=188 evalue=1.6e-70 interpro_id=IPR012795 interpro_description=Lysidine-tRNA(Ile) synthetase, N-terminal GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tRNA processing (GO:0008033), Molecular Function: ligase activity, forming carbon-nitrogen bonds (GO:0016879))
ACD51_52_15
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

14200..14697
DNA (498bp) protein (166aa)
seg (db=Seg db_id=seg from=76 to=87)
seg 76..87 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_52_16
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(14699..15004)
DNA (306bp) protein (102aa)
hypothetical protein
hypothetical protein alias=ACD51_C00052G00016,ACD51_11746.20184.10G0016,ACD51_11746.20184.10_16 id=73876 tax=ACD51 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes organism_group=PER organism_desc=PER
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_52_17

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15076..15660
DNA (585bp) protein (195aa)
seg (db=Seg db_id=seg from=169 to=189)
seg (db=Seg db_id=seg from=13 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
coiled-coil (db=Coil db_id=coil from=38 to=66 evalue=NA)
ACD51_52_18

Not on your lists

15691..16218
DNA (528bp) protein (176aa)
seg (db=Seg db_id=seg from=10 to=21)
coiled-coil (db=Coil db_id=coil from=34 to=62 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
PilO (db=HMMPfam db_id=PF04350 from=43 to=161 evalue=1.3e-07)
ACD51_52_19

Not on your lists

16287..17477
DNA (1191bp) protein (397aa)
type II secretion system protein
seg (db=Seg db_id=seg from=255 to=272)
transmembrane_regions (db=TMHMM db_id=tmhmm from=161 to=183)
transmembrane_regions (db=TMHMM db_id=tmhmm from=211 to=233)
ACD51_52_20
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

17501..18085
DNA (585bp) protein (195aa)
seg (db=Seg db_id=seg from=17 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
Pili subunits (db=superfamily db_id=SSF54523 from=16 to=145 evalue=1.2e-12)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=13 to=36 evalue=2.3e-07 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
ACD51_52_21
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

18078..18701
DNA (624bp) protein (208aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=8 to=28 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=7 to=30 evalue=9.7e-07 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
N_methyl (db=HMMPfam db_id=PF07963 from=8 to=26 evalue=1.8e-05 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
ACD51_52_22
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

18694..19341
DNA (648bp) protein (216aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
Pili subunits (db=superfamily db_id=SSF54523 from=19 to=68 evalue=1.9e-06)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=16 to=39 evalue=0.00044 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
transmembrane_regions 21..43 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_52_23
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

19334..20221
DNA (888bp) protein (296aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=13 to=26)
transmembrane_regions 13..35 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
Displaying 23 items

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