ggKbase home page

ACD51_57

Alias: ACD51_39312.22532.9

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD51_57_1

Not on your lists

1..126
DNA (126bp) protein (42aa)
1..126 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD63823.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD51_57_2

Not on your lists

113..397
DNA (285bp) protein (95aa)
seg (db=Seg db_id=seg from=65 to=88)
Uncharacterized protein {ECO:0000313|EMBL:EKD63824.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD51_57_3

Not on your lists

480..1703
DNA (1224bp) protein (408aa)
Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GIF2_9NEIS (db=UNIREF evalue=2.0e-08 bit_score=64.3 identity=34.33 coverage=30.1470588235294)
coiled-coil (db=Coil db_id=coil from=47 to=68 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKD63825.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD51_57_4
CG_PER_02, Peregrinibacteria, Bacteria

Not on your lists

1783..2226
DNA (444bp) protein (148aa)
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
seg (db=Seg db_id=seg from=130 to=140)
EPT/RTPC-like (db=superfamily db_id=SSF55205 from=1 to=129 evalue=1.3e-30 interpro_id=IPR013792 interpro_description=RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO=Molecular Function: catalytic activity (GO:0003824))
EPSP_synthase (db=HMMPfam db_id=PF00275 from=6 to=127 evalue=1.5e-27 interpro_id=IPR001986 interpro_description=3-phosphoshikimate 1-carboxyvinyltransferase, core GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
ACD51_57_5

Not on your lists

2219..3064
DNA (846bp) protein (282aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
seg (db=Seg db_id=seg from=237 to=248)
AROM/DEHYDROQUINATE SYNTHASE (db=HMMPanther db_id=PTHR21090 from=13 to=281 evalue=1.9e-99)
UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYL TRANSFERASE (db=HMMPanther db_id=PTHR21090:SF4 from=13 to=281 evalue=1.9e-99 interpro_id=IPR005750 interpro_description=UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO=Molecular Function: transferase activity (GO:0016740), Biological Process: UDP-N-acetylgalactosamine biosynthetic process (GO:0019277))
ACD51_57_6

Not on your lists

comp(3029..3901)
DNA (873bp) protein (291aa)
metallo-beta-lactamase family protein
seg (db=Seg db_id=seg from=146 to=157)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=29)
Metallo-hydrolase/oxidoreductase (db=superfamily db_id=SSF56281 from=31 to=285 evalue=8.9e-43)
ACD51_57_7

Not on your lists

comp(4000..5529)
DNA (1530bp) protein (510aa)
hypothetical protein
seg (db=Seg db_id=seg from=243 to=265)
transmembrane_regions (db=TMHMM db_id=tmhmm from=483 to=505)
Fibronectin type III (db=superfamily db_id=SSF49265 from=11 to=141 evalue=1.3e-12 interpro_id=IPR008957 interpro_description=Fibronectin, type III-like fold)
ACD51_57_8

Not on your lists

comp(5686..6756)
DNA (1071bp) protein (357aa)
slpA; S-layer protein
S-layer glycoprotein protein, contains three N-terminal SLH domains n=2 Tax=Bacillus RepID=D3FZN5_BACPE (db=UNIREF evalue=9.0e-20 bit_score=101.0 identity=34.24 coverage=49.2997198879552)
seg (db=Seg db_id=seg from=220 to=260)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
ACD51_57_9

Not on your lists

comp(7639..7812)
DNA (174bp) protein (58aa)
7639..7812 - (rbs_motif=TAA rbs_spacer=10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD63819.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD51_57_10
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(8764..9459)
DNA (696bp) protein (232aa)
hypothetical protein
Conserved hypothetical membrane protein n=2 Tax=uncultured archaeon RepID=Q2Y4H0_9ARCH (db=UNIREF evalue=8.0e-44 bit_score=180.0 identity=45.26 coverage=94.8275862068966)
seg (db=Seg db_id=seg from=113 to=125)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=30)
ACD51_57_11
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(9560..9775)
DNA (216bp) protein (72aa)
seg (db=Seg db_id=seg from=5 to=15)
large extracellular alpha-helical protein; K06894 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_57_12
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(10321..15255)
DNA (4935bp) protein (1645aa)
large extracellular alpha-helical protein
large extracellular alpha-helical protein
Conserved domain protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67KI3_SYMTH (db=UNIREF evalue=6.0e-85 bit_score=320.0 identity=28.39 coverage=58.7234042553191)
seg (db=Seg db_id=seg from=1632 to=1644)
ACD51_57_13
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(15269..15823)
DNA (555bp) protein (185aa)
ECF subfamily RNA polymerase sigma-24 subunit
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=16 to=182 evalue=2.2e-38 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=1 to=109 evalue=5.7e-19 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=5 to=92 evalue=7.8e-15)
ACD51_57_14
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(15865..17019)
DNA (1155bp) protein (385aa)
protoporphyrinogen oxidase
Protoporphyrinogen oxidase n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N4C3_SLAHD (db=UNIREF evalue=1.0e-32 bit_score=144.0 identity=27.36 coverage=95.3246753246753)
FAD/NAD(P)-binding domain (db=superfamily db_id=SSF51905 from=1 to=372 evalue=6.3e-16)
DAO (db=HMMPfam db_id=PF01266 from=5 to=89 evalue=5.9e-06 interpro_id=IPR006076 interpro_description=FAD dependent oxidoreductase GO=Molecular Function: oxidoreductase activity (GO:0016491))
ACD51_57_15
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(17016..17219)
DNA (204bp) protein (68aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions 7..29 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_57_16
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(17295..18071)
DNA (777bp) protein (259aa)
Transcriptional regulator, TrmB n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N9V7_9BACT (db=UNIREF evalue=6.0e-16 bit_score=88.2 identity=32.02 coverage=93.4362934362934)
transcriptional regulator, TrmB (db=KEGG evalue=9.0e-12 bit_score=73.9 identity=29.59 coverage=61.7760617760618)
seg (db=Seg db_id=seg from=219 to=231)
TrmB (db=HMMPfam db_id=PF01978 from=5 to=74 evalue=9.1e-14 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
ACD51_57_17
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

18219..18905
DNA (687bp) protein (229aa)
seg (db=Seg db_id=seg from=30 to=41)
seg (db=Seg db_id=seg from=45 to=56)
seg 30..41 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_57_18
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

19405..20310
DNA (906bp) protein (302aa)
seg (db=Seg db_id=seg from=123 to=137)
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=8 to=195 evalue=5.6e-13)
Radical_SAM (db=HMMPfam db_id=PF04055 from=13 to=184 evalue=7.2e-08 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
no description (db=HMMSmart db_id=SM00729 from=7 to=230 evalue=0.0052 interpro_id=IPR006638 interpro_description=Elongator protein 3/MiaB/NifB)
ACD51_57_19
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(20350..21585)
DNA (1236bp) protein (412aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=363 to=380)
transmembrane_regions (db=TMHMM db_id=tmhmm from=336 to=358)
transmembrane_regions (db=TMHMM db_id=tmhmm from=132 to=154)
ACD51_57_20
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(21552..22175)
DNA (624bp) protein (208aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
transmembrane_regions (db=TMHMM db_id=tmhmm from=177 to=195)
transmembrane_regions (db=TMHMM db_id=tmhmm from=57 to=79)
ACD51_57_21
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

22332..22535
DNA (204bp) protein (68aa)
22332..22535 + (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
Displaying 21 items

View Taxonomy