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ACD51_73

Alias: ACD51_8381.23955.10

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD51_73_1
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(3..110)
DNA (108bp) protein (36aa)
3..110 - (rbs_motif=None rbs_spacer=None)
acyl carrier protein; K02078 acyl carrier protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_73_2

Not on your lists

comp(111..1664)
DNA (1554bp) protein (518aa)
Long-chain-fatty-acid--CoA ligase, putative n=28 Tax=pseudomallei group RepID=Q2T3G5_BURTA (db=UNIREF evalue=3.0e-123 bit_score=446.0 identity=45.6 coverage=93.6293436293436)
AMP-binding enzyme family protein
AMP-binding enzyme family protein
seg (db=Seg db_id=seg from=479 to=491)
ACD51_73_3
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(1661..1900)
DNA (240bp) protein (80aa)
ACP-like (db=superfamily db_id=SSF47336 from=2 to=77 evalue=9.9e-10 interpro_id=IPR009081 interpro_description=Acyl carrier protein-like GO=Molecular Function: acyl carrier activity (GO:0000036))
no description (db=Gene3D db_id=G3DSA:1.10.1200.10 from=1 to=73 evalue=8.5e-07)
ACP_DOMAIN (db=ProfileScan db_id=PS50075 from=36 to=74 evalue=9.942 interpro_id=IPR009081 interpro_description=Acyl carrier protein-like GO=Molecular Function: acyl carrier activity (GO:0000036))
ACP-like 2..77 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_73_4
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(1893..2855)
DNA (963bp) protein (321aa)
gyaR; glyoxylate reductase (EC:1.1.1.26)
seg (db=Seg db_id=seg from=131 to=142)
2-HYDROXYACID DEHYDROGENASE (db=HMMPanther db_id=PTHR10996 from=2 to=314 evalue=4.3e-103)
2-Hacid_dh_C (db=HMMPfam db_id=PF02826 from=109 to=294 evalue=2.3e-60 interpro_id=IPR006140 interpro_description=D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding GO=Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: cofactor binding (GO:0048037))
ACD51_73_5

Not on your lists

comp(2852..4087)
DNA (1236bp) protein (412aa)
aspartate/tyrosine/aromatic aminotransferase
PLP-dependent transferases (db=superfamily db_id=SSF53383 from=4 to=411 evalue=7.7e-69 interpro_id=IPR015424 interpro_description=Pyridoxal phosphate-dependent transferase, major domain)
SUBGROUP I AMINOTRANSFERASE RELATED (db=HMMPanther db_id=PTHR11751 from=61 to=411 evalue=2.2e-47)
no description (db=Gene3D db_id=G3DSA:3.40.640.10 from=59 to=307 evalue=1.5e-37 interpro_id=IPR015421 interpro_description=Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: pyridoxal phosphate binding (GO:0030170))
ACD51_73_6
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(4084..4461)
DNA (378bp) protein (126aa)
methylmalonyl-CoA epimerase
GLYOXALASE FAMILY PROTEIN (db=HMMPanther db_id=PTHR21366 from=1 to=97 evalue=1.4e-13)
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (db=superfamily db_id=SSF54593 from=3 to=95 evalue=1.8e-13)
no description (db=Gene3D db_id=G3DSA:3.10.180.10 from=4 to=95 evalue=1.5e-12)
ACD51_73_7

Not on your lists

comp(4454..5386)
DNA (933bp) protein (311aa)
glycosyltransferase
transmembrane_regions (db=TMHMM db_id=tmhmm from=268 to=290)
seg (db=Seg db_id=seg from=239 to=252)
seg (db=Seg db_id=seg from=132 to=143)
ACD51_73_8
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(5391..5756)
DNA (366bp) protein (122aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=74 to=96)
transmembrane_regions (db=TMHMM db_id=tmhmm from=100 to=119)
transmembrane_regions (db=TMHMM db_id=tmhmm from=3 to=25)
ACD51_73_9
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

5835..6572
DNA (738bp) protein (246aa)
type 11 methyltransferase
coiled-coil (db=Coil db_id=coil from=108 to=129 evalue=NA)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=14 to=216 evalue=4.7e-34)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=41 to=182 evalue=5.2e-29)
ACD51_73_10
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

6565..7260
DNA (696bp) protein (232aa)
glycosyltransferase
seg (db=Seg db_id=seg from=135 to=147)
GLYCOSYLTRANSFERASE RELATED (db=HMMPanther db_id=PTHR10859 from=10 to=231 evalue=7.0e-42)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=212 evalue=4.2e-40)
ACD51_73_11
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(7235..9220)
DNA (1986bp) protein (662aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=467 to=489)
transmembrane_regions (db=TMHMM db_id=tmhmm from=496 to=518)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=37 to=59)
ACD51_73_12

Not on your lists

9449..10582
DNA (1134bp) protein (378aa)
metK; S-adenosylmethionine synthetase (EC:2.5.1.6)
metK; S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHE2_THEYD (db=UNIREF evalue=5.0e-146 bit_score=521.0 identity=66.67 coverage=97.6190476190476)
seg (db=Seg db_id=seg from=44 to=53)
ACD51_73_13

Not on your lists

10696..12015
DNA (1320bp) protein (440aa)
Adenosylhomocysteinase n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUK1_9DELT (db=UNIREF evalue=2.0e-180 bit_score=635.0 identity=73.91 coverage=93.8636363636364)
adenosylhomocysteinase (EC:3.3.1.1)
adenosylhomocysteinase (EC:3.3.1.1)
ADOHCYASE_1 (db=PatternScan db_id=PS00738 from=97 to=111 evalue=0.0 interpro_id=IPR020082 interpro_description=S-adenosyl-L-homocysteine hydrolase, conserved site GO=Molecular Function: adenosylhomocysteinase activity (GO:0004013), Biological Process: one-carbon metabolic process (GO:0006730))
ACD51_73_14

Not on your lists

12043..12849
DNA (807bp) protein (269aa)
Acetyltransferase, GNAT family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CE05_9PLAN (db=UNIREF evalue=5.0e-53 bit_score=211.0 identity=38.81 coverage=98.5130111524164)
hypothetical protein; K06976 (db=KEGG evalue=4.0e-10 bit_score=68.6 identity=24.63 coverage=95.1672862453532)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=2 to=265 evalue=2.2e-16 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
Acetyltransf_1 (db=HMMPfam db_id=PF00583 from=194 to=258 evalue=3.7e-13 interpro_id=IPR022610 interpro_description=GCN5-related N-acetyltransferase, C-terminal)
ACD51_73_15

Not on your lists

12891..13571
DNA (681bp) protein (227aa)
family 2 glycosyl transferase
seg (db=Seg db_id=seg from=60 to=75)
GLYCOSYLTRANSFERASE RELATED (db=HMMPanther db_id=PTHR10859 from=12 to=226 evalue=2.1e-36)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=208 evalue=4.2e-32)
ACD51_73_16

Not on your lists

13576..13908
DNA (333bp) protein (111aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=20)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=52)
transmembrane_regions (db=TMHMM db_id=tmhmm from=67 to=85)
ACD51_73_17

Not on your lists

13901..14467
DNA (567bp) protein (189aa)
phosphoheptose isomerase 1 (EC:5.3.1.-)
no description (db=Gene3D db_id=G3DSA:3.40.50.10490 from=1 to=188 evalue=3.5e-51)
SIS domain (db=superfamily db_id=SSF53697 from=6 to=188 evalue=1.1e-40)
SIS (db=HMMPfam db_id=PF01380 from=103 to=175 evalue=1.8e-08 interpro_id=IPR001347 interpro_description=Sugar isomerase (SIS) GO=Molecular Function: sugar binding (GO:0005529), Biological Process: carbohydrate metabolic process (GO:0005975))
ACD51_73_18

Not on your lists

14467..15453
DNA (987bp) protein (329aa)
ADP-heptose synthase
RfaE bifunctional protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KD61_ELUMP (db=UNIREF evalue=1.0e-62 bit_score=243.0 identity=44.04 coverage=97.2644376899696)
seg (db=Seg db_id=seg from=54 to=65)
PFKB_KINASES_1 (db=PatternScan db_id=PS00583 from=55 to=78 evalue=0.0 interpro_id=IPR002173 interpro_description=Carbohydrate/puine kinase, PfkB, conserved site)
Involved in Biosynthesis of the Lipopolysaccharide Core Precursor ADP-L-glycero-D-manno-Heptose Jill Banfield (11/15/12)
Possible ADP-dependent sugar kinase in Rubisco Archaeal type 3 pathway. distant hit. but worth noting. kelly wrighton (11/15/12)
ACD51_73_19

Not on your lists

15446..16462
DNA (1017bp) protein (339aa)
rfaE bifunctional protein
IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 (db=HMMPanther db_id=PTHR23133 from=4 to=177 evalue=1.8e-42)
HIS7-RELATED (db=HMMPanther db_id=PTHR23133:SF3 from=4 to=177 evalue=1.8e-42)
Histidinol-ppas: histidinol-phosphate (db=HMMTigr db_id=TIGR01656 from=3 to=147 evalue=1.3e-40 interpro_id=IPR006543 interpro_description=Histidinol-phosphate phosphatase GO=Biological Process: histidine biosynthetic process (GO:0000105), Molecular Function: histidinol-phosphatase activity (GO:0004401))
GmhB Jill Banfield (11/15/12)
ACD51_73_20
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

16455..17594
DNA (1140bp) protein (380aa)
glycosyl transferase family protein
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=38 to=379 evalue=2.6e-70)
no description (db=Gene3D db_id=G3DSA:3.40.50.2000 from=197 to=379 evalue=5.1e-34)
Glyco_transf_9 (db=HMMPfam db_id=PF01075 from=106 to=320 evalue=1.2e-30 interpro_id=IPR002201 interpro_description=Glycosyl transferase, family 9 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: transferase activity (GO:0016740))
ACD51_73_21

Not on your lists

comp(17835..21830)
DNA (3996bp) protein (1332aa)
hypothetical protein
RTX toxins and related Ca2+-binding protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BFU2_9BACI (db=UNIREF evalue=1.0e-19 bit_score=103.0 identity=31.16 coverage=14.1141141141141)
seg (db=Seg db_id=seg from=223 to=246)
seg (db=Seg db_id=seg from=381 to=397)
ACD51_73_22
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

22842..23966
DNA (1125bp) protein (375aa)
chaperone protein DnaJ
seg (db=Seg db_id=seg from=106 to=125)
seg (db=Seg db_id=seg from=66 to=99)
seg (db=Seg db_id=seg from=363 to=374)
Displaying 22 items

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