ggKbase home page

ACD51_8_17

Organism: PER_ACD51

near complete RP 49 / 55 MC: 15 BSCG 46 / 51 MC: 5 ASCG 0 / 38
Location: comp(17413..17982)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 37.2
  • Coverage: 183.0
  • Bit_score: 124
  • Evalue 3.10e-26
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=24 to=180 evalue=5.9e-37 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMTigr
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 5.90e-37
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=3 to=115 evalue=1.8e-23 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: superfamily
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 1.80e-23

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

uncultured bacterium → Bacteria

Sequences

DNA sequence
Length: 570
ATGATAAACAAAAATATAAATTCCGAAGACATTGATGCGCTGGTTGTTTCTGCGCAGTCCGGTGATACGGAGGCGTTTTCTTCCATTTATGACCAGTATTTTTCACATATCTATCGATATATCTATTACAGGGCGAATAAAGAGGAAGTGGATGATTTGGTTGCACGTGTCTTTATGAAGGCTTGGGATAATCTTGGTAAATATAAGCCCAAAGGAGCATCGTTTGGTGCATGGCTTTTTAAAATTGCGCATAATCTGGTTGTCGATCAGTACAGGGCTCATCGTAGTATTGATGAAATACCTATTAATCTTGCCGATGAGAGAATTTCGGCTGATCCGCAAAAAGTTGCGAATAACAGTCTGAATCAGGTCGTCTTGAAAAAGGCGCTTTGGGAACTGAAGGAGATTTATAGAAACGTGATAGTTCTTAAGTTTATAAACGGTTTCTCTAATCAAGAAATTGCAGAGATTATGAAGCGAAACGAGGGCAATATTAGAATTTTACAGTTTAGGGCGTTGAAGGAGTTAAAAGTTTCGTTGGAGAAAATGGGATATGAGTGGGGGGGGTGA
PROTEIN sequence
Length: 190
MINKNINSEDIDALVVSAQSGDTEAFSSIYDQYFSHIYRYIYYRANKEEVDDLVARVFMKAWDNLGKYKPKGASFGAWLFKIAHNLVVDQYRAHRSIDEIPINLADERISADPQKVANNSLNQVVLKKALWELKEIYRNVIVLKFINGFSNQEIAEIMKRNEGNIRILQFRALKELKVSLEKMGYEWGG*