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ACD52_17

Alias: ACD52_467436.11212.6

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD52_17_1
R_RIF_OP11_02_39_21, RIF-OP11-2, Microgenomates, Bacteria

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comp(326..937)
DNA (612bp) protein (204aa)
NADP-specific glutamate dehydrogenase
seg (db=Seg db_id=seg from=77 to=98)
seg (db=Seg db_id=seg from=37 to=53)
GLUTAMATE DEHYDROGENASE (db=HMMPanther db_id=PTHR11606:SF2 from=1 to=194 evalue=7.7e-65 interpro_id=IPR006095 interpro_description=Glutamate/phenylalanine/leucine/valine dehydrogenase GO=Biological Process: cellular amino acid metabolic process (GO:0006520), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
ACD52_17_2

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2269..2475
DNA (207bp) protein (69aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=35 to=57)
SECE_SEC61G (db=PatternScan db_id=PS01067 from=13 to=41 evalue=0.0 interpro_id=IPR001901 interpro_description=Protein secE/sec61-gamma protein GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
SecE (db=HMMPfam db_id=PF00584 from=10 to=64 evalue=3.8e-19 interpro_id=IPR001901 interpro_description=Protein secE/sec61-gamma protein GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
secE_bact: preprotein translocase, SecE sub (db=HMMTigr db_id=TIGR00964 from=10 to=66 evalue=2.6e-15 interpro_id=IPR005807 interpro_description=SecE subunit of protein translocation complex GO=Biological Process: protein secretion (GO:0009306), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: integral to membrane (GO:0016021))
ACD52_17_3

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2482..3102
DNA (621bp) protein (207aa)
hypothetical protein
NUSG (db=PatternScan db_id=PS01014 from=189 to=198 evalue=0.0 interpro_id=IPR015869 interpro_description=Transcription antitermination protein, NusG, bacteria, conserved site)
nusG: transcription termination/antiterminat (db=HMMTigr db_id=TIGR00922 from=37 to=206 evalue=1.3e-77 interpro_id=IPR001062 interpro_description=Transcription antitermination protein, NusG GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=HMMSmart db_id=SM00738 from=34 to=142 evalue=2.0e-43 interpro_id=IPR006645 interpro_description=Transcription antitermination protein, NusG, N-terminal GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter (GO:0032968))
ACD52_17_4

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comp(3108..3383)
DNA (276bp) protein (92aa)
3108..3383 - (rbs_motif=TAA rbs_spacer=5bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD62310.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD52_17_5

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3522..3959
DNA (438bp) protein (146aa)
50S ribosomal protein L11
RIBOSOMAL_L11 (db=PatternScan db_id=PS00359 from=127 to=142 evalue=0.0 interpro_id=IPR020785 interpro_description=Ribosomal protein L11, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L11_bact: ribosomal protein L11 (db=HMMTigr db_id=TIGR01632 from=4 to=142 evalue=1.7e-70 interpro_id=IPR006519 interpro_description=Ribosomal protein L11, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=HMMSmart db_id=SM00649 from=10 to=141 evalue=2.4e-64 interpro_id=IPR000911 interpro_description=Ribosomal protein L11 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD52_17_6

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3946..4767
DNA (822bp) protein (274aa)
rplA; 50S ribosomal protein L1
seg (db=Seg db_id=seg from=19 to=40)
coiled-coil (db=Coil db_id=coil from=19 to=40 evalue=NA)
Ribosomal protein L1 (db=superfamily db_id=SSF56808 from=85 to=271 evalue=9.1e-36 interpro_id=IPR002143 interpro_description=Ribosomal protein L1 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))
ACD52_17_7

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comp(4764..5204)
DNA (441bp) protein (147aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=35 to=57)
transmembrane_regions (db=TMHMM db_id=tmhmm from=78 to=100)
transmembrane_regions (db=TMHMM db_id=tmhmm from=115 to=137)
Uncharacterized protein {ECO:0000313|EMBL:EKD62313.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD52_17_8

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comp(6265..7572)
DNA (1308bp) protein (436aa)
seg (db=Seg db_id=seg from=119 to=138)
coiled-coil (db=Coil db_id=coil from=24 to=45 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKD62304.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD52_17_9

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comp(7723..7941)
DNA (219bp) protein (73aa)
7723..7941 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD62305.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD52_17_10

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comp(8093..8413)
DNA (321bp) protein (107aa)
ParBc (db=HMMPfam db_id=PF02195 from=32 to=86 evalue=0.00018 interpro_id=IPR003115 interpro_description=ParB-like nuclease GO=Molecular Function: DNA binding (GO:0003677))
Uncharacterized protein {ECO:0000313|EMBL:EKD62306.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD52_17_11

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8478..8969
DNA (492bp) protein (164aa)
8478..8969 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD62307.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD52_17_12

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10350..10598
DNA (249bp) protein (83aa)
seg (db=Seg db_id=seg from=48 to=62)
Uncharacterized protein {ECO:0000313|EMBL:EKD62301.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD52_17_13

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comp(10613..11038)
DNA (426bp) protein (142aa)
hypothetical protein
Putative toxin-antitoxin system, toxin component n=1 Tax=Anaerobaculum hydrogeniformans ATCC BAA-1850 RepID=D3KZY5_9BACT (db=UNIREF evalue=3.0e-13 bit_score=77.4 identity=32.2 coverage=79.5774647887324)
seg (db=Seg db_id=seg from=4 to=16)
DUF86 (db=HMMPfam db_id=PF01934 from=16 to=132 evalue=8.4e-25 interpro_id=IPR008201 interpro_description=Protein of unknown function DUF86)
ACD52_17_14

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comp(10998..11246)
DNA (249bp) protein (83aa)
10998..11246 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD62303.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 14 items

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