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ACD52_21

Alias: ACD52_29493.7709.9

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD52_21_1
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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1..285
DNA (285bp) protein (95aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=64 to=86)
regulatory protein MerR Tax=RBG_16_RIF_OP11_02_41_13_curated
ACD52_21_2
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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comp(292..1698)
DNA (1407bp) protein (469aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=295 to=312)
transmembrane_regions (db=TMHMM db_id=tmhmm from=317 to=339)
seg (db=Seg db_id=seg from=66 to=78)
seg (db=Seg db_id=seg from=149 to=158)
ACD52_21_3
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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comp(1707..1952)
DNA (246bp) protein (82aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=43 to=62)
transmembrane_regions 20..39 Tax=RBG_16_RIF_OP11_02_41_13_curated
ACD52_21_4
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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comp(1964..2602)
DNA (639bp) protein (213aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=166 to=188)
seg (db=Seg db_id=seg from=52 to=60)
Cache_1 (db=HMMPfam db_id=PF02743 from=29 to=103 evalue=2.6e-06 interpro_id=IPR004010 interpro_description=Cache GO=Cellular Component: membrane (GO:0016020))
seg 52..60 Tax=RBG_16_RIF_OP11_02_41_13_curated
ACD52_21_5
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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comp(3062..3454)
DNA (393bp) protein (131aa)
response regulator receiver sensor signal transduction histidine kinase
CheY-like (db=superfamily db_id=SSF52172 from=2 to=122 evalue=9.0e-30 interpro_id=IPR011006 interpro_description=CheY-like)
TWO-COMPONENT SYSTEM SENSOR HISTIDINE KINASE/RESPONSE REGULATOR (INTESTINAL BACTERIA - BACTEROIDES THETAIOTAOMICRON) (db=HMMPanther db_id=PTHR23283:SF21 from=1 to=105 evalue=2.5e-26)
SENSOR HISTIDINE KINASE-RELATED (db=HMMPanther db_id=PTHR23283 from=1 to=105 evalue=2.5e-26)
ACD52_21_6
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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comp(3456..3848)
DNA (393bp) protein (131aa)
Response regulator receiver protein n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUP7_ACIBL (db=UNIREF evalue=5.0e-08 bit_score=60.1 identity=33.33 coverage=88.5496183206107)
CheY-like (db=superfamily db_id=SSF52172 from=4 to=129 evalue=1.4e-18 interpro_id=IPR011006 interpro_description=CheY-like)
Response_reg (db=HMMPfam db_id=PF00072 from=9 to=113 evalue=1.6e-16 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=8 to=112 evalue=2.4e-12)
ACD52_21_7
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(3876..4532)
DNA (657bp) protein (219aa)
two-component sensor histidine kinase
TWO COMPONENT SENSOR HISTIDINE KINASE (PHOR) (db=HMMPanther db_id=PTHR23283:SF34 from=1 to=199 evalue=2.9e-49)
SENSOR HISTIDINE KINASE-RELATED (db=HMMPanther db_id=PTHR23283 from=1 to=199 evalue=2.9e-49)
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (db=superfamily db_id=SSF55874 from=47 to=200 evalue=1.0e-42 interpro_id=IPR003594 interpro_description=ATPase-like, ATP-binding domain GO=Molecular Function: ATP binding (GO:0005524))
ACD52_21_8
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(5220..6404)
DNA (1185bp) protein (395aa)
ATPase
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=7 to=233 evalue=1.2e-18)
ATPase; K07133 alias=ACD52_C00021G00008,ACD52_29493.7709.9G0008,ACD52_29493.7709.9_8 id=74817 tax=ACD52 species=Dyadobacter fermentans genus=Dyadobacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes organism_group=OP11 organism_desc=OP11
ATPase; K07133 Tax=RBG_16_RIF_OP11_02_41_13_curated
ACD52_21_9
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(6454..7038)
DNA (585bp) protein (195aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
seg (db=Seg db_id=seg from=177 to=186)
seg (db=Seg db_id=seg from=16 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=57 to=79)
ACD52_21_10
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(7051..7746)
DNA (696bp) protein (232aa)
hypothetical protein
Penicillin-binding protein, transpeptidase n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0Z083_9CYAN (db=UNIREF evalue=2.0e-14 bit_score=82.8 identity=27.83 coverage=92.6724137931034)
beta-lactamase/transpeptidase-like (db=superfamily db_id=SSF56601 from=1 to=221 evalue=1.9e-26 interpro_id=IPR012338 interpro_description=Beta-lactamase-type transpeptidase fold)
beta-lactamase; K01467 beta-lactamase [EC:3.5.2.6] Tax=RBG_16_RIF_OP11_02_41_13_curated
Displaying 10 items

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