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ACD52_60

Alias: ACD52_77654.10418.7

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD52_60_1
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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comp(17..121)
DNA (105bp) protein (35aa)
17..121 - (rbs_motif=TAAT rbs_spacer=10bp)
hypothetical protein Tax=RBG_16_RIF_OP11_02_41_13_curated
ACD52_60_2
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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comp(209..2710)
DNA (2502bp) protein (834aa)
hypothetical protein
hypothetical protein
ATPase, P-type (Transporting), HAD superfamily, subfamily IC n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KSE1_CLOPH (db=UNIREF evalue=6.0e-135 bit_score=485.0 identity=36.59 coverage=91.726618705036)
seg (db=Seg db_id=seg from=491 to=498)
ACD52_60_3
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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comp(2707..3693)
DNA (987bp) protein (329aa)
Magnesium transporter mgtE
MgtE integral membrane region n=1 Tax=Mycobacterium vanbaalenii PYR-1 RepID=A1T510_MYCVP (db=UNIREF evalue=3.0e-47 bit_score=192.0 identity=33.55 coverage=89.6656534954407)
transmembrane_regions (db=TMHMM db_id=tmhmm from=167 to=189)
transmembrane_regions (db=TMHMM db_id=tmhmm from=196 to=218)
ACD52_60_4
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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3735..5009
DNA (1275bp) protein (425aa)
peptidase M16 domain-containing protein
INSULINASE (db=PatternScan db_id=PS00143 from=34 to=57 evalue=0.0 interpro_id=IPR001431 interpro_description=Peptidase M16, zinc-binding site GO=Molecular Function: metalloendopeptidase activity (GO:0004222), Biological Process: proteolysis (GO:0006508))
METALLOPROTEASE (db=HMMPanther db_id=PTHR11851 from=29 to=412 evalue=4.2e-101)
no description (db=Gene3D db_id=G3DSA:3.30.830.10 from=2 to=212 evalue=5.8e-58 interpro_id=IPR011237 interpro_description=Peptidase M16, core GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: metal ion binding (GO:0046872))
ACD52_60_5
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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5012..5593
DNA (582bp) protein (194aa)
nucleoside-diphosphate kinase
Nucleoside diphosphate kinase, NDK (db=superfamily db_id=SSF54919 from=1 to=182 evalue=1.2e-43 interpro_id=IPR001564 interpro_description=Nucleoside diphosphate kinase, core GO=Molecular Function: nucleoside diphosphate kinase activity (GO:0004550), Molecular Function: ATP binding (GO:0005524), Biological Process: GTP biosynthetic process (GO:0006183), Biological Process: UTP biosynthetic process (GO:0006228), Biological Process: CTP biosynthetic process (GO:0006241))
no description (db=HMMSmart db_id=SM00562 from=1 to=182 evalue=1.8e-41 interpro_id=IPR001564 interpro_description=Nucleoside diphosphate kinase, core GO=Molecular Function: nucleoside diphosphate kinase activity (GO:0004550), Molecular Function: ATP binding (GO:0005524), Biological Process: GTP biosynthetic process (GO:0006183), Biological Process: UTP biosynthetic process (GO:0006228), Biological Process: CTP biosynthetic process (GO:0006241))
no description (db=Gene3D db_id=G3DSA:3.30.70.141 from=2 to=192 evalue=5.5e-34 interpro_id=IPR001564 interpro_description=Nucleoside diphosphate kinase, core GO=Molecular Function: nucleoside diphosphate kinase activity (GO:0004550), Molecular Function: ATP binding (GO:0005524), Biological Process: GTP biosynthetic process (GO:0006183), Biological Process: UTP biosynthetic process (GO:0006228), Biological Process: CTP biosynthetic process (GO:0006241))
ACD52_60_6
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(5415..6602)
DNA (1188bp) protein (396aa)
seg (db=Seg db_id=seg from=29 to=48)
seg (db=Seg db_id=seg from=93 to=101)
seg (db=Seg db_id=seg from=109 to=137)
seg (db=Seg db_id=seg from=164 to=176)
ACD52_60_7
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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6632..8161
DNA (1530bp) protein (510aa)
laminin G, domain-containing 2
Serine/threonine protein kinase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C267_9PLAN (db=UNIREF evalue=1.0e-18 bit_score=99.0 identity=28.48 coverage=52.3529411764706)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=39)
seg (db=Seg db_id=seg from=23 to=39)
ACD52_60_8
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(8162..8590)
DNA (429bp) protein (143aa)
seg (db=Seg db_id=seg from=83 to=98)
seg (db=Seg db_id=seg from=67 to=79)
Peptidase_C39 (db=HMMPfam db_id=PF03412 from=33 to=118 evalue=2.7e-06 interpro_id=IPR005074 interpro_description=Peptidase C39, bacteriocin processing GO=Molecular Function: ATP binding (GO:0005524), Biological Process: proteolysis (GO:0006508), Molecular Function: peptidase activity (GO:0008233), Cellular Component: integral to membrane (GO:0016021))
seg 83..98 Tax=RBG_16_RIF_OP11_02_41_13_curated
ACD52_60_9
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(9027..9161)
DNA (135bp) protein (45aa)
9027..9161 - (rbs_motif=AAT rbs_spacer=4bp)
hypothetical protein Tax=RBG_16_RIF_OP11_02_41_13_curated
ACD52_60_10

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comp(9712..9954)
DNA (243bp) protein (81aa)
excinuclease ABC subunit C-like protein
GIY-YIG (db=HMMPfam db_id=PF01541 from=1 to=66 evalue=9.5e-08 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=1 to=66 evalue=1.2e-07 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
Excinuclease ABC, C subunit-like protein {ECO:0000313|EMBL:EKD62120.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 10 items

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