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ACD52_81

Alias: ACD52_22527.14013.8

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD52_81_1
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

399..1943
DNA (1545bp) protein (515aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=NC10 bacterium 'Dutch sediment' RepID=D5MK66_9BACT (db=UNIREF evalue=1.0e-98 bit_score=363.0 identity=38.7 coverage=98.8349514563107)
seg (db=Seg db_id=seg from=267 to=277)
ACD52_81_2

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1951..3105
DNA (1155bp) protein (385aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=333 to=350)
transmembrane_regions (db=TMHMM db_id=tmhmm from=230 to=252)
transmembrane_regions (db=TMHMM db_id=tmhmm from=273 to=295)
ACD52_81_3
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

3149..4165
DNA (1017bp) protein (339aa)
RND family efflux transporter MFP subunit
seg (db=Seg db_id=seg from=312 to=326)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
coiled-coil (db=Coil db_id=coil from=144 to=165 evalue=NA)
ACD52_81_4
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

4128..4829
DNA (702bp) protein (234aa)
putative ABC transporter ATP-binding protein
seg (db=Seg db_id=seg from=42 to=51)
ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF32 from=10 to=229 evalue=2.0e-103)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=10 to=229 evalue=2.0e-103)
ACD52_81_5
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

4826..6028
DNA (1203bp) protein (401aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=23 to=45)
seg (db=Seg db_id=seg from=365 to=377)
seg (db=Seg db_id=seg from=333 to=353)
ACD52_81_6
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

6047..6376
DNA (330bp) protein (110aa)
hypothetical protein
hypothetical protein alias=ACD52_22527.14013.8G0006,ACD52_22527.14013.8_6,ACD52_C00081G00006 id=75317 tax=ACD52 species=Anabaena variabilis genus=Anabaena taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria organism_group=OP11 organism_desc=OP11
hypothetical protein Tax=RBG_16_RIF_OP11_02_41_13_curated
ACD52_81_7
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

6373..6684
DNA (312bp) protein (104aa)
6373..6684 + (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=RBG_16_RIF_OP11_02_41_13_curated
ACD52_81_8
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(6686..7615)
DNA (930bp) protein (310aa)
seg (db=Seg db_id=seg from=70 to=88)
seg (db=Seg db_id=seg from=60 to=69)
transmembrane_regions (db=TMHMM db_id=tmhmm from=243 to=262)
transmembrane_regions (db=TMHMM db_id=tmhmm from=206 to=228)
ACD52_81_9
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(7646..8230)
DNA (585bp) protein (195aa)
seg (db=Seg db_id=seg from=75 to=91)
seg (db=Seg db_id=seg from=13 to=28)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions 5..27 Tax=RBG_16_RIF_OP11_02_41_13_curated
ACD52_81_10

Not on your lists

comp(8253..9392)
DNA (1140bp) protein (380aa)
quinoprotein glucose dehydrogenase (EC:1.1.5.2)
quinoprotein glucose dehydrogenase (EC:1.1.5.2)
seg (db=Seg db_id=seg from=5 to=17)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
ACD52_81_11
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(9432..10031)
DNA (600bp) protein (200aa)
Superoxide dismutase (EC:1.15.1.1)
SOD_MN (db=PatternScan db_id=PS00088 from=164 to=171 evalue=0.0 interpro_id=IPR019833 interpro_description=Manganese/iron superoxide dismutase, binding site GO=Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolic process (GO:0006801), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation reduction (GO:0055114))
Superoxide dismutase, Mn/Fe specific (db=HMMPIR db_id=PIRSF000349 from=1 to=199 evalue=2.5e-104 interpro_id=IPR001189 interpro_description=Manganese/iron superoxide dismutase GO=Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolic process (GO:0006801), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation reduction (GO:0055114))
SUPEROXIDE DISMUTASE 2 (db=HMMPanther db_id=PTHR11404 from=1 to=198 evalue=1.5e-103 interpro_id=IPR001189 interpro_description=Manganese/iron superoxide dismutase GO=Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolic process (GO:0006801), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation reduction (GO:0055114))
ACD52_81_12
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

10117..11166
DNA (1050bp) protein (350aa)
D-alanine-D-alanine ligase-like protein
seg (db=Seg db_id=seg from=238 to=249)
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=127 to=347 evalue=1.8e-26)
D-ALANINE--D-ALANINE LIGASE (db=HMMPanther db_id=PTHR23132 from=73 to=341 evalue=2.4e-14)
ACD52_81_13
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

11150..12133
DNA (984bp) protein (328aa)
SH3 type 3 domain-containing protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
no description (db=HMMSmart db_id=SM00854 from=62 to=286 evalue=1.3e-78 interpro_id=IPR019079 interpro_description=Capsule synthesis protein, CapA)
PGA_cap (db=HMMPfam db_id=PF09587 from=62 to=286 evalue=1.0e-66 interpro_id=IPR019079 interpro_description=Capsule synthesis protein, CapA)
ACD52_81_14
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(12130..14046)
DNA (1917bp) protein (639aa)
Clp protease ATP-binding protein
clp protease ATP binding subunit n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B2080 (db=UNIREF evalue=6.0e-84 bit_score=315.0 identity=31.65 coverage=94.3661971830986)
seg (db=Seg db_id=seg from=597 to=607)
Displaying 14 items

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