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ACD52_84

Alias: ACD52_483866.8034.7

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD52_84_1

Not on your lists

3..221
DNA (219bp) protein (73aa)
hypothetical protein
UPF0047 (db=HMMPfam db_id=PF01894 from=4 to=63 evalue=1.5e-13 interpro_id=IPR001602 interpro_description=Uncharacterised protein family UPF0047)
YjbQ-like (db=superfamily db_id=SSF111038 from=1 to=67 evalue=1.9e-11 interpro_id=IPR001602 interpro_description=Uncharacterised protein family UPF0047)
no description (db=Gene3D db_id=G3DSA:2.60.120.460 from=7 to=67 evalue=1.3e-08 interpro_id=IPR001602 interpro_description=Uncharacterised protein family UPF0047)
ACD52_84_2

Not on your lists

comp(213..542)
DNA (330bp) protein (110aa)
213..542 - (rbs_motif=TAA rbs_spacer=9bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD62272.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD52_84_3

Not on your lists

comp(542..802)
DNA (261bp) protein (87aa)
ATP-cone (db=HMMPfam db_id=PF03477 from=3 to=78 evalue=7.2e-09 interpro_id=IPR005144 interpro_description=ATP-cone)
ATP_CONE (db=ProfileScan db_id=PS51161 from=2 to=86 evalue=11.259 interpro_id=IPR005144 interpro_description=ATP-cone)
Uncharacterized protein {ECO:0000313|EMBL:EKD62273.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD52_84_4

Not on your lists

921..1229
DNA (309bp) protein (103aa)
seg (db=Seg db_id=seg from=87 to=100)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=40 to=62)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
ACD52_84_5

Not on your lists

comp(1708..1812)
DNA (105bp) protein (35aa)
seg (db=Seg db_id=seg from=5 to=13)
Uncharacterized protein {ECO:0000313|EMBL:EKD62268.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD52_84_6

Not on your lists

1824..2216
DNA (393bp) protein (131aa)
1824..2216 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD62269.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
ACD52_84_7

Not on your lists

2213..3682
DNA (1470bp) protein (490aa)
Glycosyl transferase family 39 n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4AZ41_9CHRO (db=UNIREF evalue=1.0e-13 bit_score=82.0 identity=27.56 coverage=67.5510204081633)
glycosyl transferase family 39 (db=KEGG evalue=6.0e-13 bit_score=79.3 identity=28.95 coverage=50.8163265306122)
transmembrane_regions (db=TMHMM db_id=tmhmm from=219 to=236)
transmembrane_regions (db=TMHMM db_id=tmhmm from=243 to=265)
ACD52_84_8

Not on your lists

4195..4548
DNA (354bp) protein (118aa)
ABC transporter
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=1 to=110 evalue=8.0e-26)
METAL ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF31 from=1 to=110 evalue=8.0e-26)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=82 evalue=3.4e-25)
ACD52_84_9

Not on your lists

4538..5305
DNA (768bp) protein (256aa)
ABC transporter permease
ABC-3 protein n=1 Tax=Methanococcus aeolicus Nankai-3 RepID=A6UU68_META3 (db=UNIREF evalue=2.0e-20 bit_score=102.0 identity=37.05 coverage=87.109375)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=73)
transmembrane_regions (db=TMHMM db_id=tmhmm from=80 to=102)
ACD52_84_10

Not on your lists

5339..6076
DNA (738bp) protein (246aa)
seg (db=Seg db_id=seg from=213 to=231)
seg (db=Seg db_id=seg from=182 to=206)
Cyt-b5 (db=HMMPfam db_id=PF00173 from=127 to=175 evalue=0.00023 interpro_id=IPR001199 interpro_description=Cytochrome b5 GO=Molecular Function: heme binding (GO:0020037))
Uncharacterized protein {ECO:0000313|EMBL:EKD62264.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
check for cyt b5 domain Jill Banfield (11/15/12)
ACD52_84_11

Not on your lists

6159..7448
DNA (1290bp) protein (430aa)
putative ferric reductase
transmembrane_regions (db=TMHMM db_id=tmhmm from=37 to=59)
transmembrane_regions (db=TMHMM db_id=tmhmm from=152 to=174)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
Ferredoxin reductase-like, C-terminal NADP-linked domain kelly wrighton (11/15/12)
ACD52_84_12

Not on your lists

7455..7847
DNA (393bp) protein (131aa)
cytochrome b5
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=22)
CYTOCHROME_B5_1 (db=PatternScan db_id=PS00191 from=82 to=89 evalue=0.0 interpro_id=IPR018506 interpro_description=Cytochrome b5, heme-binding site GO=Molecular Function: heme binding (GO:0020037))
Cytochrome b5-like heme/steroid binding domain (db=superfamily db_id=SSF55856 from=50 to=129 evalue=4.8e-18 interpro_id=IPR001199 interpro_description=Cytochrome b5 GO=Molecular Function: heme binding (GO:0020037))
ACD52_84_13

Not on your lists

7856..8068
DNA (213bp) protein (71aa)
two component transcriptional regulator, winged helix family
CheY-like (db=superfamily db_id=SSF52172 from=1 to=68 evalue=9.7e-19 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=1 to=68 evalue=2.4e-16)
Response_reg (db=HMMPfam db_id=PF00072 from=3 to=70 evalue=5.8e-15 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Displaying 13 items

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