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ACD52_92

Alias: ACD52_15168.8937.8

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD52_92_1
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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comp(2..451)
DNA (450bp) protein (150aa)
nuclear protein SET
SET domain (db=superfamily db_id=SSF82199 from=2 to=129 evalue=1.7e-26)
HISTONE-LYSINE N-METHYLTRANSFERASE, SUV9 (db=HMMPanther db_id=PTHR22884:SF25 from=72 to=132 evalue=5.9e-09)
SET DOMAIN PROTEINS (db=HMMPanther db_id=PTHR22884 from=72 to=132 evalue=5.9e-09)
ACD52_92_2
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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479..817
DNA (339bp) protein (113aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=83 to=105)
transmembrane_regions (db=TMHMM db_id=tmhmm from=56 to=73)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
ACD52_92_3
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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832..999
DNA (168bp) protein (56aa)
832..999 + (rbs_motif=AAT rbs_spacer=11bp)
hypothetical protein Tax=RBG_16_RIF_OP11_02_41_13_curated
ACD52_92_4
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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comp(1137..2396)
DNA (1260bp) protein (420aa)
glutamate dehydrogenase/leucine dehydrogenase (EC:1.4.1.3)
glutamate dehydrogenase/leucine dehydrogenase (EC:1.4.1.3)
Glutamate dehydrogenase n=2 Tax=Thermoplasma RepID=Q97AN9_THEVO (db=UNIREF evalue=3.0e-100 bit_score=369.0 identity=48.34 coverage=98.3333333333333)
seg (db=Seg db_id=seg from=95 to=112)
ACD52_92_5
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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2513..2707
DNA (195bp) protein (65aa)
Ribosomal_S21 (db=HMMPfam db_id=PF01165 from=3 to=51 evalue=8.8e-09 interpro_id=IPR001911 interpro_description=Ribosomal protein S21 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S21 (db=HAMAP db_id=MF_00358 from=1 to=64 evalue=9.846 interpro_id=IPR001911 interpro_description=Ribosomal protein S21 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S21 3..51 Tax=RBG_16_RIF_OP11_02_41_13_curated
ACD52_92_6
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(2704..3351)
DNA (648bp) protein (216aa)
ribonuclease HII/HIII
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=6 to=210 evalue=8.7e-50 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
RNase_HII (db=HMMPfam db_id=PF01351 from=20 to=211 evalue=1.7e-33 interpro_id=IPR001352 interpro_description=Ribonuclease HII/HIII GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease H activity (GO:0004523))
no description (db=Gene3D db_id=G3DSA:3.30.420.10 from=18 to=175 evalue=3.8e-29)
ACD52_92_7
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

3393..3596
DNA (204bp) protein (68aa)
secE; preprotein translocase subunit SecE
transmembrane_regions (db=TMHMM db_id=tmhmm from=35 to=57)
SECE_SEC61G (db=PatternScan db_id=PS01067 from=13 to=41 evalue=0.0 interpro_id=IPR001901 interpro_description=Protein secE/sec61-gamma protein GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
SecE (db=HMMPfam db_id=PF00584 from=10 to=65 evalue=1.7e-20 interpro_id=IPR001901 interpro_description=Protein secE/sec61-gamma protein GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
ACD52_92_8
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

3598..4218
DNA (621bp) protein (207aa)
NusG antitermination factor
NUSG (db=PatternScan db_id=PS01014 from=189 to=198 evalue=0.0 interpro_id=IPR015869 interpro_description=Transcription antitermination protein, NusG, bacteria, conserved site)
nusG: transcription termination/antiterminat (db=HMMTigr db_id=TIGR00922 from=37 to=206 evalue=2.5e-77 interpro_id=IPR001062 interpro_description=Transcription antitermination protein, NusG GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=HMMSmart db_id=SM00738 from=34 to=142 evalue=7.2e-42 interpro_id=IPR006645 interpro_description=Transcription antitermination protein, NusG, N-terminal GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter (GO:0032968))
ACD52_92_9
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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4234..4659
DNA (426bp) protein (142aa)
rplK; 50S ribosomal protein L11
RIBOSOMAL_L11 (db=PatternScan db_id=PS00359 from=126 to=141 evalue=0.0 interpro_id=IPR020785 interpro_description=Ribosomal protein L11, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L11_bact: ribosomal protein L11 (db=HMMTigr db_id=TIGR01632 from=3 to=141 evalue=1.5e-67 interpro_id=IPR006519 interpro_description=Ribosomal protein L11, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=HMMSmart db_id=SM00649 from=9 to=140 evalue=3.0e-66 interpro_id=IPR000911 interpro_description=Ribosomal protein L11 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD52_92_10
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists


4652..5470
DNA (819bp) protein (273aa)
50S ribosomal protein L1P
50S ribosomal protein L1 n=2 Tax=Mobiluncus mulieris RepID=C2KMR7_9ACTO (db=UNIREF evalue=4.0e-28 bit_score=128.0 identity=38.21 coverage=65.2014652014652)
seg (db=Seg db_id=seg from=19 to=35)
seg (db=Seg db_id=seg from=79 to=93)
ACD52_92_11
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(5467..7008)
DNA (1542bp) protein (514aa)
seg (db=Seg db_id=seg from=265 to=280)
seg (db=Seg db_id=seg from=345 to=363)
seg (db=Seg db_id=seg from=376 to=387)
seg (db=Seg db_id=seg from=445 to=455)
ACD52_92_12
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

7015..8379
DNA (1365bp) protein (455aa)
7015..8379 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=RBG_16_RIF_OP11_02_41_13_curated
ACD52_92_13
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

8424..8897
DNA (474bp) protein (158aa)
8424..8897 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=RBG_16_RIF_OP11_02_41_13_curated
Displaying 13 items

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