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ACD52_102

Alias: ACD52_390335.5366.8

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD52_102_1

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comp(3..530)
DNA (528bp) protein (176aa)
50S ribosomal protein L2
50S RIBOSOMAL PROTEIN L2 (db=HMMPanther db_id=PTHR13691:SF5 from=63 to=176 evalue=1.7e-48 interpro_id=IPR005880 interpro_description=Ribosomal protein L2, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934), Molecular Function: transferase activity (GO:0016740))
RIBOSOMAL PROTEIN L2 (db=HMMPanther db_id=PTHR13691 from=63 to=176 evalue=1.7e-48 interpro_id=IPR002171 interpro_description=Ribosomal protein L2 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplB_bact: ribosomal protein L2 (db=HMMTigr db_id=TIGR01171 from=1 to=176 evalue=1.6e-41 interpro_id=IPR005880 interpro_description=Ribosomal protein L2, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934), Molecular Function: transferase activity (GO:0016740))
ACD52_102_2
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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comp(527..820)
DNA (294bp) protein (98aa)
Ribosomal proteins S24e, L23 and L15e (db=superfamily db_id=SSF54189 from=3 to=91 evalue=7.9e-15 interpro_id=IPR012678 interpro_description=Ribosomal protein L23/L15e, core GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L23 (db=HMMPfam db_id=PF00276 from=4 to=89 evalue=9.3e-15 interpro_id=IPR013025 interpro_description=Ribosomal protein L25/L23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.70.330 from=3 to=91 evalue=3.1e-12 interpro_id=IPR012677 interpro_description=Nucleotide-binding, alpha-beta plait GO=Molecular Function: nucleotide binding (GO:0000166))
rplW; 50S ribosomal protein L23 Tax=RBG_16_RIF_OP11_02_41_13_curated
ACD52_102_3

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comp(817..1428)
DNA (612bp) protein (204aa)
50S ribosomal protein L4/L1e
Ribosomal protein L4 (db=superfamily db_id=SSF52166 from=1 to=200 evalue=3.5e-40 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L4 (db=HMMPfam db_id=PF00573 from=18 to=199 evalue=3.2e-38 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L4 (db=HMMPanther db_id=PTHR10746 from=18 to=198 evalue=3.9e-32 interpro_id=IPR013005 interpro_description=Ribosomal protein L4/L1e, bacterial-type)
ACD52_102_4
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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comp(1425..1574)
DNA (150bp) protein (50aa)
Translation proteins (db=superfamily db_id=SSF50447 from=1 to=48 evalue=2.4e-10 interpro_id=IPR009000 interpro_description=Translation elongation/initiation factor/Ribosomal, beta-barrel)
50S RIBOSOMAL PROTEIN L3 (db=HMMPanther db_id=PTHR11229 from=1 to=44 evalue=7.5e-10)
rplC; 50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 Tax=RBG_16_RIF_OP11_02_41_13_curated
ACD52_102_5
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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2247..2819
DNA (573bp) protein (191aa)
Major facilitator superfamily MFS_1
transmembrane_regions (db=TMHMM db_id=tmhmm from=150 to=183)
transmembrane_regions (db=TMHMM db_id=tmhmm from=98 to=120)
transmembrane_regions (db=TMHMM db_id=tmhmm from=76 to=93)
ACD52_102_6
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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comp(2816..4762)
DNA (1947bp) protein (649aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=NC10 bacterium 'Dutch sediment' RepID=D5MLR2_9BACT (db=UNIREF evalue=1.0e-68 bit_score=265.0 identity=31.92 coverage=98.613251155624)
seg (db=Seg db_id=seg from=612 to=623)
coiled-coil (db=Coil db_id=coil from=206 to=227 evalue=NA)
Displaying 6 items

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