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ACD52_108

Alias: ACD52_470155.6464.8

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD52_108_1
R_RIF_OP11_02_39_21, RIF-OP11-2, Microgenomates, Bacteria

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2..469
DNA (468bp) protein (156aa)
seg (db=Seg db_id=seg from=106 to=121)
seg (db=Seg db_id=seg from=130 to=141)
seg (db=Seg db_id=seg from=48 to=60)
LPS BIOSYNTHESIS RELATED PROTEIN (db=HMMPanther db_id=PTHR12526:SF42 from=8 to=47 evalue=4.2e-09)
ACD52_108_2

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608..1822
DNA (1215bp) protein (405aa)
hypothetical protein
alpha-amylase n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B206C (db=UNIREF evalue=1.0e-126 bit_score=457.0 identity=54.59 coverage=96.5432098765432)
seg (db=Seg db_id=seg from=193 to=204)
ACD52_108_3

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1912..2196
DNA (285bp) protein (95aa)
1912..2196 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD62292.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD52_108_4

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2202..4184
DNA (1983bp) protein (661aa)
glycosyl hydrolase, glucoamylase (EC:3.2.1.3)
Similar to glucoamylase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWT2_9BACT (db=UNIREF evalue=2.0e-159 bit_score=566.0 identity=42.97 coverage=99.0922844175492)
seg (db=Seg db_id=seg from=466 to=474)
Six-hairpin glycosidases (db=superfamily db_id=SSF48208 from=235 to=650 evalue=7.5e-94 interpro_id=IPR008928 interpro_description=Six-hairpin glycosidase-like GO=Molecular Function: catalytic activity (GO:0003824))
ACD52_108_5

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comp(4169..5233)
DNA (1065bp) protein (355aa)
RNA polymerase sigma factor
seg (db=Seg db_id=seg from=19 to=48)
coiled-coil (db=Coil db_id=coil from=83 to=104 evalue=NA)
SIGMA70_2 (db=PatternScan db_id=PS00716 from=322 to=348 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
ACD52_108_6

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5295..6482
DNA (1188bp) protein (396aa)
tgt; Queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Q_tRNA_tgt: queuine tRNA-ribosyltransfera (db=HMMTigr db_id=TIGR00430 from=5 to=393 evalue=2.6e-121 interpro_id=IPR004803 interpro_description=Queuine tRNA-ribosyltransferase GO=Biological Process: tRNA processing (GO:0008033), Molecular Function: queuine tRNA-ribosyltransferase activity (GO:0008479), Biological Process: queuosine biosynthetic process (GO:0008616))
no description (db=Gene3D db_id=G3DSA:3.20.20.105 from=5 to=394 evalue=1.7e-111 interpro_id=IPR002616 interpro_description=Queuine/other tRNA-ribosyltransferase GO=Biological Process: tRNA modification (GO:0006400), Molecular Function: queuine tRNA-ribosyltransferase activity (GO:0008479), Biological Process: queuosine biosynthetic process (GO:0008616))
tRNA-guanine transglycosylase (db=superfamily db_id=SSF51713 from=1 to=395 evalue=9.8e-111 interpro_id=IPR002616 interpro_description=Queuine/other tRNA-ribosyltransferase GO=Biological Process: tRNA modification (GO:0006400), Molecular Function: queuine tRNA-ribosyltransferase activity (GO:0008479), Biological Process: queuosine biosynthetic process (GO:0008616))
Displaying 6 items

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