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ACD52_156

Alias: ACD52p_44124.10344.9

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD52_156_1
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(2..451)
DNA (450bp) protein (150aa)
putative Na(+)/Ca(2+) antiporter
seg (db=Seg db_id=seg from=2 to=17)
transmembrane_regions (db=TMHMM db_id=tmhmm from=38 to=60)
transmembrane_regions (db=TMHMM db_id=tmhmm from=70 to=92)
ACD52_156_2

Not on your lists

comp(457..2910)
DNA (2454bp) protein (818aa)
hypothetical protein
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=791 to=808)
ACD52_156_3
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(2920..3177)
DNA (258bp) protein (86aa)
2920..3177 - ( gc_cont=0.419)
hypothetical protein Tax=RBG_16_RIF_OP11_02_41_13_curated
ACD52_156_4
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(3270..3677)
DNA (408bp) protein (136aa)
Putative uncharacterized protein n=1 Tax=Aciduliprofundum boonei T469 RepID=B5IF53_ACIB4 (db=UNIREF evalue=5.0e-24 bit_score=113.0 identity=45.19 coverage=97.0588235294118)
hypothetical protein (db=KEGG evalue=3.0e-09 bit_score=63.5 identity=35.65 coverage=82.3529411764706)
Putative uncharacterized protein Tax=RBG_16_RIF_OP11_02_41_13_curated
ACD52_156_5
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(3749..3982)
DNA (234bp) protein (78aa)
Putative uncharacterized protein n=1 Tax=Aciduliprofundum boonei T469 RepID=B5IBE1_ACIB4 (db=UNIREF evalue=3.0e-09 bit_score=64.7 identity=45.31 coverage=80.7692307692308)
succinyl-CoA synthetase (alpha subunit)
succinyl-CoA synthetase (alpha subunit) Tax=RBG_16_RIF_OP11_02_41_13_curated
ACD52_156_6
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(4061..5776)
DNA (1716bp) protein (572aa)
ATP-dependent DNA ligase I (EC:6.5.1.1)
ATP-dependent DNA ligase I (EC:6.5.1.1)
seg (db=Seg db_id=seg from=217 to=228)
ACD52_156_7

Not on your lists

comp(5773..5976)
DNA (204bp) protein (68aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
seg (db=Seg db_id=seg from=56 to=65)
Uncharacterized protein {ECO:0000313|EMBL:EKD61996.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD52_156_8

Not on your lists

comp(5978..7042)
DNA (1065bp) protein (355aa)
hypothetical protein
Fic-like (db=superfamily db_id=SSF140931 from=78 to=273 evalue=5.5e-40)
(db=HMMPfam db_id=PF02661 from=104 to=207 evalue=1.2e-19 interpro_id=IPR003812 interpro_description=Filamentation induced by cAMP/death on curing-related)
FAMILY NOT NAMED (db=HMMPanther db_id=PTHR13504 from=42 to=212 evalue=1.1e-18)
ACD52_156_9
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(7085..7921)
DNA (837bp) protein (279aa)
carbohydrate kinase
seg (db=Seg db_id=seg from=207 to=219)
yjeF_cterm: YjeF homolog, C-terminus (db=HMMTigr db_id=TIGR00196 from=2 to=276 evalue=2.3e-33 interpro_id=IPR000631 interpro_description=Uncharacterised domain, carbohydrate kinase-related)
Ribokinase-like (db=superfamily db_id=SSF53613 from=8 to=278 evalue=1.2e-32)
ACD52_156_10
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(7987..8133)
DNA (147bp) protein (49aa)
7987..8133 - ( gc_cont=0.367)
hypothetical protein Tax=RBG_16_RIF_OP11_02_41_13_curated
ACD52_156_11
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(8130..8555)
DNA (426bp) protein (142aa)
DNA replication and repair protein RecF
DNA replication and repair protein recF n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVC4_9BACT (db=UNIREF evalue=2.0e-25 bit_score=118.0 identity=47.46 coverage=79.5774647887324)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=22 to=140 evalue=8.4e-13)
DNA replication and repair protein RecF; K03629 DNA replication and repair protein RecF Tax=RBG_16_RIF_OP11_02_41_13_curated
ACD52_156_12

Not on your lists

9394..10377
DNA (984bp) protein (328aa)
Integrase n=2 Tax=Yersinia RepID=C4U858_YERAL (db=UNIREF evalue=4.0e-25 bit_score=119.0 identity=29.05 coverage=86.890243902439)
integrase
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=133 to=300 evalue=2.3e-30 interpro_id=IPR012337 interpro_description=Ribonuclease H-like GO=Molecular Function: nucleic acid binding (GO:0003676))
(db=HMMPfam db_id=PF00665 from=140 to=249 evalue=1.0e-23 interpro_id=IPR001584 interpro_description=Integrase, catalytic core GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA integration (GO:0015074))
Displaying 12 items

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