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ACD5_15

Alias: ACD5_17476.19611.10

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD5_15_1

Not on your lists

comp(3..167)
DNA (165bp) protein (55aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
seg (db=Seg db_id=seg from=13 to=32)
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=9 to=29 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
Pili subunits (db=superfamily db_id=SSF54523 from=11 to=54 evalue=3.0e-16)
ACD5_15_2

Not on your lists

comp(213..644)
DNA (432bp) protein (144aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=40 to=51)
seg (db=Seg db_id=seg from=9 to=28)
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=5 to=25 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
ACD5_15_3

Not on your lists

comp(703..1911)
DNA (1209bp) protein (403aa)
Type II secretion system F domain
pilin biogenesis protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B268E (db=UNIREF evalue=1.0e-71 bit_score=273.0 identity=36.05 coverage=98.7593052109181)
transmembrane_regions (db=TMHMM db_id=tmhmm from=169 to=191)
transmembrane_regions (db=TMHMM db_id=tmhmm from=222 to=241)
ACD5_15_4

Not on your lists

comp(2019..3095)
DNA (1077bp) protein (359aa)
Twitching motility protein n=1 Tax=Thermocrinis albus DSM 14484 RepID=D3SLP1_THEAH (db=UNIREF evalue=3.0e-96 bit_score=355.0 identity=47.79 coverage=93.8718662952646)
twitching motility protein PilT
twitching motility protein PilT
pilT_fam: twitching motility protein (db=HMMTigr db_id=TIGR01420 from=8 to=350 evalue=1.3e-159 interpro_id=IPR006321 interpro_description=Pilus retraction protein PilT GO=Molecular Function: ATP binding (GO:0005524), Biological Process: transport (GO:0006810))
ACD5_15_5

Not on your lists

comp(3154..3531)
DNA (378bp) protein (126aa)
response regulator
CheY-like (db=superfamily db_id=SSF52172 from=1 to=124 evalue=9.4e-35 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=HMMSmart db_id=SM00448 from=4 to=119 evalue=7.8e-30 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=2 to=123 evalue=4.6e-28)
ACD5_15_6

Not on your lists

comp(3556..5271)
DNA (1716bp) protein (572aa)
type IV pilus assembly protein PilB
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=141 to=558 evalue=1.6e-105)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=270 to=566 evalue=1.2e-91)
GSPII_E (db=HMMPfam db_id=PF00437 from=161 to=436 evalue=2.0e-77 interpro_id=IPR001482 interpro_description=Type II secretion system protein E GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: transport (GO:0006810))
ACD5_15_7

Not on your lists

comp(5346..6146)
DNA (801bp) protein (267aa)
seg (db=Seg db_id=seg from=114 to=128)
seg (db=Seg db_id=seg from=29 to=45)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
coiled-coil (db=Coil db_id=coil from=30 to=51 evalue=NA)
ACD5_15_8

Not on your lists

comp(6213..6767)
DNA (555bp) protein (185aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=17 to=30)
Uncharacterized protein {ECO:0000313|EMBL:EKE25771.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_15_9

Not on your lists

comp(6838..7947)
DNA (1110bp) protein (370aa)
type IV pilus assembly protein PilM
pilM: type IV pilus assembly protein PilM (db=HMMTigr db_id=TIGR01175 from=8 to=363 evalue=4.4e-39 interpro_id=IPR005883 interpro_description=Type IV pilus assembly protein PilM)
Actin-like ATPase domain (db=superfamily db_id=SSF53067 from=197 to=361 evalue=1.9e-18)
Competence_A (db=HMMPfam db_id=PF11104 from=56 to=196 evalue=2.2e-13)
ACD5_15_10

Not on your lists

8118..8852
DNA (735bp) protein (245aa)
phosphoribosyltransferase
PRTase-like (db=superfamily db_id=SSF53271 from=59 to=237 evalue=2.0e-21)
Pribosyltran (db=HMMPfam db_id=PF00156 from=178 to=236 evalue=3.8e-09 interpro_id=IPR000836 interpro_description=Phosphoribosyltransferase GO=Biological Process: nucleoside metabolic process (GO:0009116))
RIBOSE-PHOSPHATE PYROPHOSPHOKINASE (db=HMMPanther db_id=PTHR10210 from=198 to=235 evalue=2.2e-05)
ACD5_15_11

Not on your lists

8932..9165
DNA (234bp) protein (78aa)
8932..9165 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE25774.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_15_12

Not on your lists

comp(9249..9845)
DNA (597bp) protein (199aa)
UPI00016E204E related cluster n=2 Tax=Takifugu rubripes RepID=UPI00016E204E (db=UNIREF evalue=7.0e-16 bit_score=87.0 identity=31.19 coverage=96.9849246231156)
thtpa; thiamine triphosphatase; K05307 thiamine-triphosphatase [EC:3.6.1.28] (db=KEGG evalue=2.0e-15 bit_score=85.1 identity=32.59 coverage=97.9899497487437)
coiled-coil (db=Coil db_id=coil from=144 to=165 evalue=NA)
CYTH (db=HMMPfam db_id=PF01928 from=4 to=168 evalue=2.9e-11 interpro_id=IPR008172 interpro_description=Adenylate cyclase GO=Molecular Function: adenylate cyclase activity (GO:0004016), Biological Process: cAMP biosynthetic process (GO:0006171))
ACD5_15_13

Not on your lists

comp(9855..10178)
DNA (324bp) protein (108aa)
hypothetical protein
RmlC-like cupins (db=superfamily db_id=SSF51182 from=7 to=107 evalue=5.8e-19 interpro_id=IPR011051 interpro_description=Cupin, RmlC-type)
Cupin_2 (db=HMMPfam db_id=PF07883 from=39 to=105 evalue=1.2e-08 interpro_id=IPR013096 interpro_description=Cupin 2, conserved barrel)
cupin region alias=ACD5_17476.19611.10G0013,ACD5_17476.19611.10_13,ACD5_C00015G00013 id=88195 tax=ACD5 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes organism_group=OD1-i organism_desc=OD1-i
ACD5_15_14

Not on your lists

comp(10220..10729)
DNA (510bp) protein (170aa)
10220..10729 - (rbs_motif=TAA rbs_spacer=11bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE25777.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_15_15

Not on your lists

comp(10787..10972)
DNA (186bp) protein (62aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=20)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=41)
Uncharacterized protein {ECO:0000313|EMBL:EKE25778.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_15_16
GWC1_OD1_38_22, Parcubacteria, Bacteria

Not on your lists

comp(10972..11955)
DNA (984bp) protein (328aa)
arabinose efflux permease family protein
tetracycline resistance protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745101 (db=UNIREF evalue=3.0e-36 bit_score=155.0 identity=35.31 coverage=95.1219512195122)
transmembrane_regions (db=TMHMM db_id=tmhmm from=140 to=162)
seg (db=Seg db_id=seg from=301 to=311)
ACD5_15_17

Not on your lists

12198..12629
DNA (432bp) protein (144aa)
12198..12629 + (rbs_motif=TAA rbs_spacer=12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE25763.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_15_18

Not on your lists

comp(13098..13331)
DNA (234bp) protein (78aa)
LexA/Signal peptidase (db=superfamily db_id=SSF51306 from=1 to=62 evalue=4.3e-07 interpro_id=IPR015927 interpro_description=Peptidase S24/S26A/S26B/S26C)
Uncharacterized protein {ECO:0000313|EMBL:EKE25762.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_15_19

Not on your lists

comp(13357..13797)
DNA (441bp) protein (147aa)
lexA; LexA repressor (EC:3.4.21.88)
seg (db=Seg db_id=seg from=136 to=144)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=7 to=77 evalue=2.6e-16)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=6 to=75 evalue=1.9e-12 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
ACD5_15_20

Not on your lists

14065..14415
DNA (351bp) protein (117aa)
CheY-like (db=superfamily db_id=SSF52172 from=1 to=105 evalue=3.3e-06 interpro_id=IPR011006 interpro_description=CheY-like)
Uncharacterized protein {ECO:0000313|EMBL:EKE25759.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_15_21

Not on your lists

comp(14827..15846)
DNA (1020bp) protein (340aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=30)
transmembrane_regions (db=TMHMM db_id=tmhmm from=45 to=67)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
transmembrane_regions (db=TMHMM db_id=tmhmm from=132 to=154)
ACD5_15_22

Not on your lists

comp(15882..16769)
DNA (888bp) protein (296aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
transmembrane_regions (db=TMHMM db_id=tmhmm from=78 to=100)
seg (db=Seg db_id=seg from=36 to=55)
ACD5_15_23

Not on your lists

comp(17419..17775)
DNA (357bp) protein (119aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
transmembrane_regions (db=TMHMM db_id=tmhmm from=93 to=115)
seg (db=Seg db_id=seg from=94 to=111)
ACD5_15_24

Not on your lists

comp(17789..18763)
DNA (975bp) protein (325aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=8 to=25)
Uncharacterized protein {ECO:0000313|EMBL:EKE25757.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_15_25

Not on your lists

comp(18998..19396)
DNA (399bp) protein (133aa)
hypothetical protein VparAQ_10055 n=1 Tax=Vibrio parahaemolyticus AQ4037 RepID=UPI0001BC71C4 (db=UNIREF evalue=4.0e-11 bit_score=70.5 identity=32.31 coverage=88.7218045112782)
transmembrane_regions (db=TMHMM db_id=tmhmm from=63 to=85)
transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=48)
DUF304 (db=HMMPfam db_id=PF03703 from=86 to=132 evalue=5.1e-07 interpro_id=IPR005182 interpro_description=Protein of unknown function DUF304, transmembrane flanked domain, bacterial)
Displaying 25 items

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