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ACD5_24

Alias: ACD5_50221.17966.9

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD5_24_1

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51..248
DNA (198bp) protein (66aa)
seg (db=Seg db_id=seg from=36 to=53)
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
Uncharacterized protein {ECO:0000313|EMBL:EKE25213.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_24_2

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268..549
DNA (282bp) protein (94aa)
Ku protein n=1 Tax=Geobacter sp. M18 RepID=C6MLQ1_9DELT (db=UNIREF evalue=1.0e-22 bit_score=108.0 identity=55.7 coverage=82.9787234042553)
DNA repair protein
SPOC domain-like (db=superfamily db_id=SSF100939 from=1 to=79 evalue=1.3e-11 interpro_id=IPR016194 interpro_description=Spen Paralogue and Orthologue SPOC, C-terminal-like GO=Molecular Function: binding (GO:0005488))
Ku (db=HMMPfam db_id=PF02735 from=6 to=78 evalue=7.3e-10 interpro_id=IPR006164 interpro_description=DNA helicase, ATP-dependent, Ku type GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: ATP-dependent DNA helicase activity (GO:0004003), Biological Process: double-strand break repair via nonhomologous end joining (GO:0006303))
ACD5_24_3

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606..1037
DNA (432bp) protein (144aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=76 to=98)
transmembrane_regions (db=TMHMM db_id=tmhmm from=49 to=71)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=113 to=132)
ACD5_24_4

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1196..1747
DNA (552bp) protein (184aa)
seg (db=Seg db_id=seg from=132 to=146)
seg (db=Seg db_id=seg from=5 to=18)
Uncharacterized protein {ECO:0000313|EMBL:EKE25216.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_24_5

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1993..2985
DNA (993bp) protein (331aa)
1993..2985 + (rbs_motif=TAAAA rbs_spacer=14bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE25210.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_24_6

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3020..3520
DNA (501bp) protein (167aa)
rubrerythrin
no description (db=Gene3D db_id=G3DSA:1.20.1260.10 from=2 to=128 evalue=7.4e-38 interpro_id=IPR012347 interpro_description=Ferritin-related)
Ferritin-like (db=superfamily db_id=SSF47240 from=2 to=130 evalue=2.1e-30 interpro_id=IPR009078 interpro_description=Ferritin/ribonucleotide reductase-like GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: transition metal ion binding (GO:0046914), Biological Process: oxidation reduction (GO:0055114))
Rubrerythrin (db=HMMPfam db_id=PF02915 from=7 to=120 evalue=3.8e-20 interpro_id=IPR003251 interpro_description=Rubrerythrin GO=Molecular Function: metal ion binding (GO:0046872))
ACD5_24_7

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3672..5123
DNA (1452bp) protein (484aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=215 to=243 evalue=NA)
coiled-coil (db=Coil db_id=coil from=257 to=278 evalue=NA)
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=128 to=142 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
ACD5_24_8

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6393..6773
DNA (381bp) protein (127aa)
peptide methionine sulfoxide reductase
Peptide methionine sulfoxide reductase (db=superfamily db_id=SSF55068 from=2 to=115 evalue=2.5e-34 interpro_id=IPR002569 interpro_description=Peptide methionine sulphoxide reductase MsrA GO=Molecular Function: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor (GO:0016671), Biological Process: protein metabolic process (GO:0019538), Biological Process: oxidation reduction (GO:0055114))
PMSR (db=HMMPfam db_id=PF01625 from=2 to=104 evalue=2.9e-31 interpro_id=IPR002569 interpro_description=Peptide methionine sulphoxide reductase MsrA GO=Molecular Function: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor (GO:0016671), Biological Process: protein metabolic process (GO:0019538), Biological Process: oxidation reduction (GO:0055114))
no description (db=Gene3D db_id=G3DSA:3.30.1060.10 from=2 to=104 evalue=1.4e-26 interpro_id=IPR002569 interpro_description=Peptide methionine sulphoxide reductase MsrA GO=Molecular Function: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor (GO:0016671), Biological Process: protein metabolic process (GO:0019538), Biological Process: oxidation reduction (GO:0055114))
ACD5_24_9

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6773..7438
DNA (666bp) protein (222aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
Peptidase_M23 (db=HMMPfam db_id=PF01551 from=91 to=196 evalue=8.0e-06 interpro_id=IPR016047 interpro_description=Peptidase M23)
Uncharacterized protein {ECO:0000313|EMBL:EKE25199.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_24_10

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7907..8053
DNA (147bp) protein (49aa)
7907..8053 + (rbs_motif=TAAAA rbs_spacer=4bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE25200.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_24_11

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comp(8072..8488)
DNA (417bp) protein (139aa)
histone-lysine N-methyltransferase (EC:2.1.1.43)
SET domain (db=superfamily db_id=SSF82199 from=13 to=135 evalue=1.5e-39)
no description (db=HMMSmart db_id=SM00317 from=10 to=119 evalue=1.1e-30 interpro_id=IPR001214 interpro_description=SET domain)
MIXED-LINEAGE LEUKEMIA PROTEIN, MLL (db=HMMPanther db_id=PTHR22884:SF10 from=20 to=112 evalue=1.2e-25 interpro_id=IPR015722 interpro_description=MLL Transcription Factor)
lysine degradation Jill Banfield (11/15/12)
ACD5_24_12

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8639..9259
DNA (621bp) protein (207aa)
hypothetical protein
DUF162 (db=HMMPfam db_id=PF02589 from=102 to=200 evalue=1.7e-15 interpro_id=IPR003741 interpro_description=Lactate utilization protein B/C)
NagB/RpiA/CoA transferase-like (db=superfamily db_id=SSF100950 from=9 to=158 evalue=2.3e-06)
Uncharacterized protein {ECO:0000313|EMBL:EKE25202.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_24_13

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9383..9979
DNA (597bp) protein (199aa)
RNA polymerase subunit sigma-24
seg (db=Seg db_id=seg from=58 to=69)
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=18 to=183 evalue=5.3e-38 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=3 to=110 evalue=6.7e-25 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
ACD5_24_14

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10096..10500
DNA (405bp) protein (135aa)
seg (db=Seg db_id=seg from=38 to=51)
seg (db=Seg db_id=seg from=106 to=119)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=64)
transmembrane_regions (db=TMHMM db_id=tmhmm from=101 to=120)
ACD5_24_15

Not on your lists

10522..11010
DNA (489bp) protein (163aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
Uncharacterized protein {ECO:0000313|EMBL:EKE25205.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_24_16

Not on your lists

11032..12216
DNA (1185bp) protein (395aa)
RND family efflux transporter MFP subunit
seg (db=Seg db_id=seg from=11 to=20)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=26)
seg (db=Seg db_id=seg from=47 to=61)
ACD5_24_17

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12350..13030
DNA (681bp) protein (227aa)
ABC transporter-like protein
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=143 to=157 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=2 to=224 evalue=6.3e-111)
ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF32 from=2 to=224 evalue=6.3e-111)
ACD5_24_18

Not on your lists

13057..14274
DNA (1218bp) protein (406aa)
antimicrobial peptide ABC transporter permease
transmembrane_regions (db=TMHMM db_id=tmhmm from=329 to=351)
transmembrane_regions (db=TMHMM db_id=tmhmm from=276 to=298)
seg (db=Seg db_id=seg from=198 to=211)
ACD5_24_19

Not on your lists

14378..14818
DNA (441bp) protein (147aa)
seg (db=Seg db_id=seg from=51 to=70)
seg (db=Seg db_id=seg from=76 to=93)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
Uncharacterized protein {ECO:0000313|EMBL:EKE25209.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_24_20

Not on your lists

14962..15222
DNA (261bp) protein (87aa)
membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
seg (db=Seg db_id=seg from=3 to=20)
DUF2078 (db=HMMPfam db_id=PF09851 from=14 to=83 evalue=2.0e-23 interpro_id=IPR018649 interpro_description=Protein of unknown function DUF2078, membrane)
ACD5_24_21

Not on your lists

15425..16633
DNA (1209bp) protein (403aa)
ATPase, AAA family protein n=2 Tax=Thermoanaerobacteraceae RepID=B7R9B7_9THEO (db=UNIREF evalue=1.0e-133 bit_score=480.0 identity=57.21 coverage=97.5186104218362)
recombination factor protein RarA
recombination factor protein RarA
coiled-coil (db=Coil db_id=coil from=77 to=98 evalue=NA)
ACD5_24_22

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16656..17420
DNA (765bp) protein (255aa)
glycosyl transferase family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=216 to=238)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=212 evalue=4.9e-43)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=6 to=201 evalue=1.0e-33)
ACD5_24_23

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comp(17455..17883)
DNA (429bp) protein (143aa)
hypothetical protein Bcoam_11970 n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001850F63 (db=UNIREF evalue=9.0e-10 bit_score=65.9 identity=36.08 coverage=58.7412587412587)
hypothetical protein (db=KEGG evalue=1.0e-08 bit_score=62.0 identity=40.0 coverage=59.4405594405594)
seg (db=Seg db_id=seg from=22 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=91 to=108)
Displaying 23 items

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