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ACD5_35

Alias: ACD5_298.6773.9

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD5_35_1

Not on your lists

comp(2..97)
DNA (96bp) protein (32aa)
seg (db=Seg db_id=seg from=17 to=25)
Uncharacterized protein {ECO:0000313|EMBL:EKE25531.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_35_2

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comp(445..1434)
DNA (990bp) protein (330aa)
Glyceraldehyde 3-phosphate dehydrogenase n=1 Tax=Clostridium tetani RepID=Q898R4_CLOTE (db=UNIREF evalue=4.0e-107 bit_score=391.0 identity=58.68 coverage=99.0909090909091)
glyceraldehyde 3-phosphate dehydrogenase (EC:1.2.1.12)
glyceraldehyde 3-phosphate dehydrogenase (EC:1.2.1.12)
GAPDH-I: glyceraldehyde-3-phosphate dehydrog (db=HMMTigr db_id=TIGR01534 from=3 to=322 evalue=9.7e-173 interpro_id=IPR006424 interpro_description=Glyceraldehyde-3-phosphate dehydrogenase, type I GO=Biological Process: glucose metabolic process (GO:0006006), Molecular Function: glyceraldehyde-3-phosphate dehydrogenase activity (GO:0008943), Molecular Function: NAD or NADH binding (GO:0051287), Biological Process: oxidation reduction (GO:0055114))
ACD5_35_3

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comp(1450..1692)
DNA (243bp) protein (81aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=41)
seg (db=Seg db_id=seg from=21 to=30)
seg (db=Seg db_id=seg from=41 to=55)
Uncharacterized protein {ECO:0000313|EMBL:EKE25533.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_35_4

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comp(1765..2202)
DNA (438bp) protein (146aa)
type IV pilin; K02650 type IV pilus assembly protein PilA (db=KEGG evalue=1.0e-08 bit_score=62.0 identity=41.3 coverage=60.958904109589)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
Pili subunits (db=superfamily db_id=SSF54523 from=16 to=112 evalue=7.2e-19)
no description (db=Gene3D db_id=G3DSA:3.30.700.10 from=15 to=73 evalue=6.9e-08)
ACD5_35_5

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comp(2231..2506)
DNA (276bp) protein (92aa)
HypA (db=HMMPfam db_id=PF01155 from=1 to=81 evalue=2.1e-07 interpro_id=IPR000688 interpro_description=Hydrogenase nickel incorporation protein HypA/HybF GO=Biological Process: protein modification process (GO:0006464), Molecular Function: nickel ion binding (GO:0016151))
Uncharacterized protein {ECO:0000313|EMBL:EKE25535.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_35_6

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comp(2536..3798)
DNA (1263bp) protein (421aa)
hypothetical protein
Nickel-dependent hydrogenase large subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GED6_9FIRM (db=UNIREF evalue=1.0e-64 bit_score=251.0 identity=34.61 coverage=98.3372921615202)
seg (db=Seg db_id=seg from=99 to=118)
NI_HGENASE_L_2 (db=PatternScan db_id=PS00508 from=411 to=420 evalue=0.0 interpro_id=IPR018194 interpro_description=Nickel-dependent hydrogenase, large subunit, nickel binding site GO=Molecular Function: ferredoxin hydrogenase activity (GO:0008901), Molecular Function: nickel ion binding (GO:0016151), Biological Process: oxidation reduction (GO:0055114))
ACD5_35_7

Not on your lists

comp(3880..4737)
DNA (858bp) protein (286aa)
NADH ubiquinone oxidoreductase 20 kDa subunit
NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Allochromatium vinosum DSM 180 RepID=D3RQF0_ALLVD (db=UNIREF evalue=6.0e-39 bit_score=164.0 identity=36.94 coverage=76.5734265734266)
seg (db=Seg db_id=seg from=74 to=86)
seg (db=Seg db_id=seg from=2 to=14)
ACD5_35_8

Not on your lists

4816..6024
DNA (1209bp) protein (403aa)
(NiFe) hydrogenase maturation protein HypF
hydrogenase expression regulatory protein HypF; K04656 hydrogenase maturation protein HypF alias=ACD5_298.6773.9G0008,ACD5_298.6773.9_8,ACD5_C00035G00008 id=88374 tax=ACD5 species=Methanocaldococcus jannaschii genus=Methanocaldococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota organism_group=OD1-i organism_desc=OD1-i
Uncharacterized protein {ECO:0000313|EMBL:EKE25538.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_35_9

Not on your lists

comp(6004..6810)
DNA (807bp) protein (269aa)
hydrogenase expression/formation protein HypE
hypE: hydrogenase expression/formation prote (db=HMMTigr db_id=TIGR02124 from=1 to=268 evalue=8.0e-78 interpro_id=IPR011854 interpro_description=Hydrogenase expression/formation protein HypE)
PurM C-terminal domain-like (db=superfamily db_id=SSF56042 from=95 to=255 evalue=2.1e-25 interpro_id=IPR010918 interpro_description=AIR synthase related protein, C-terminal)
AIRS_C (db=HMMPfam db_id=PF02769 from=103 to=246 evalue=1.1e-21 interpro_id=IPR010918 interpro_description=AIR synthase related protein, C-terminal)
Displaying 9 items

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