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ACD5_42

Alias: ACD5_53838.15848.9

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD5_42_1

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comp(3..596)
DNA (594bp) protein (198aa)
putative CHAP domain containing protein
LysM domain (db=superfamily db_id=SSF54106 from=102 to=147 evalue=2.0e-09)
LysM (db=HMMPfam db_id=PF01476 from=105 to=147 evalue=1.0e-08 interpro_id=IPR018392 interpro_description=Peptidoglycan-binding lysin domain GO=Biological Process: cell wall macromolecule catabolic process (GO:0016998))
LysM (db=HMMPfam db_id=PF01476 from=155 to=198 evalue=6.6e-08 interpro_id=IPR018392 interpro_description=Peptidoglycan-binding lysin domain GO=Biological Process: cell wall macromolecule catabolic process (GO:0016998))
ACD5_42_2

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1057..1977
DNA (921bp) protein (307aa)
Tyrosine recombinase XerD
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=109 to=301 evalue=9.2e-55 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=114 to=297 evalue=3.0e-51 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
Phage_integrase (db=HMMPfam db_id=PF00589 from=115 to=290 evalue=1.1e-43 interpro_id=IPR002104 interpro_description=Integrase, catalytic core, phage GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
ACD5_42_3

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comp(2012..2932)
DNA (921bp) protein (307aa)
UvrD/REP helicase
seg (db=Seg db_id=seg from=128 to=137)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=43 to=273 evalue=2.1e-55)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=132 to=230 evalue=1.4e-32)
ACD5_42_4

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comp(4352..4744)
DNA (393bp) protein (131aa)
rsmA; ribosomal RNA small subunit methyltransferase A
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=1 to=130 evalue=4.9e-27)
DIMETHYLADENOSINE TRANSFERASE (db=HMMPanther db_id=PTHR11727 from=1 to=130 evalue=9.0e-23 interpro_id=IPR001737 interpro_description=Ribosomal RNA adenine methylase transferase GO=Biological Process: rRNA modification (GO:0000154), Molecular Function: rRNA (adenine-N6,N6-)-dimethyltransferase activity (GO:0000179), Molecular Function: rRNA methyltransferase activity (GO:0008649))
RrnaAD (db=HMMPfam db_id=PF00398 from=1 to=124 evalue=4.0e-19 interpro_id=IPR001737 interpro_description=Ribosomal RNA adenine methylase transferase GO=Biological Process: rRNA modification (GO:0000154), Molecular Function: rRNA (adenine-N6,N6-)-dimethyltransferase activity (GO:0000179), Molecular Function: rRNA methyltransferase activity (GO:0008649))
ACD5_42_5
GWD2_OD1_38_11, Parcubacteria, Bacteria

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comp(4872..5186)
DNA (315bp) protein (105aa)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RDA2_WEIPA (db=UNIREF evalue=2.0e-16 bit_score=87.8 identity=51.19 coverage=79.0476190476191)
ksgA; dimethyladenosine transferase
seg (db=Seg db_id=seg from=86 to=100)
RRNA_A_DIMETH (db=PatternScan db_id=PS01131 from=34 to=61 evalue=0.0 interpro_id=IPR020596 interpro_description=Ribosomal RNA adenine methylase transferase, conserved site GO=Biological Process: rRNA modification (GO:0000154), Molecular Function: rRNA (adenine-N6,N6-)-dimethyltransferase activity (GO:0000179), Molecular Function: rRNA methyltransferase activity (GO:0008649))
ACD5_42_6

Not on your lists

comp(5308..6195)
DNA (888bp) protein (296aa)
hypothetical protein
Rare lipoprotein A n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJA9_9FIRM (db=UNIREF evalue=1.0e-18 bit_score=97.4 identity=28.1 coverage=93.2432432432432)
seg (db=Seg db_id=seg from=159 to=176)
G5 (db=HMMPfam db_id=PF07501 from=134 to=207 evalue=1.8e-17 interpro_id=IPR011098 interpro_description=G5 GO=Molecular Function: hydrolase activity (GO:0016787))
ACD5_42_7

Not on your lists

comp(6399..7577)
DNA (1179bp) protein (393aa)
Mg chelatase, subunit ChlI n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFW7_THET1 (db=UNIREF evalue=4.0e-119 bit_score=431.0 identity=54.9 coverage=98.4732824427481)
Mg chelatase subunit ChlI
Mg chelatase subunit ChlI
seg (db=Seg db_id=seg from=285 to=297)
ACD5_42_8

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comp(8087..8788)
DNA (702bp) protein (234aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=183 to=205)
transmembrane_regions (db=TMHMM db_id=tmhmm from=140 to=162)
transmembrane_regions (db=TMHMM db_id=tmhmm from=103 to=125)
seg (db=Seg db_id=seg from=47 to=63)
ACD5_42_9

Not on your lists

comp(8840..10669)
DNA (1830bp) protein (610aa)
Type IV secretory pathway VirB4 components-like protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS14_9BACT (db=UNIREF evalue=9.0e-180 bit_score=634.0 identity=50.76 coverage=94.9180327868852)
Type IV secretory pathway VirB4 components-like protein
Type IV secretory pathway VirB4 components-like protein
coiled-coil (db=Coil db_id=coil from=126 to=147 evalue=NA)
ACD5_42_10

Not on your lists

comp(10701..11387)
DNA (687bp) protein (229aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS15_9BACT (db=UNIREF evalue=7.0e-26 bit_score=120.0 identity=35.2 coverage=82.5327510917031)
seg (db=Seg db_id=seg from=2 to=18)
seg (db=Seg db_id=seg from=130 to=140)
ACD5_42_11

Not on your lists

comp(11479..11931)
DNA (453bp) protein (151aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=63)
Uncharacterized protein {ECO:0000313|EMBL:EKE25143.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_42_12

Not on your lists

comp(11957..12373)
DNA (417bp) protein (139aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=114 to=136)
transmembrane_regions (db=TMHMM db_id=tmhmm from=72 to=94)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=51)
seg (db=Seg db_id=seg from=75 to=85)
ACD5_42_13

Not on your lists

comp(13030..13656)
DNA (627bp) protein (209aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=166 to=188)
transmembrane_regions (db=TMHMM db_id=tmhmm from=124 to=146)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=130 to=141)
ACD5_42_14

Not on your lists

comp(13672..15120)
DNA (1449bp) protein (483aa)
family 1 extracellular solute-binding protein
seg (db=Seg db_id=seg from=346 to=357)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=34)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=32 to=465 evalue=7.7e-39)
ACD5_42_15

Not on your lists

comp(15151..15702)
DNA (552bp) protein (184aa)
methyltransferase type 11
2-HEPTAPRENYL-1,4-NAPHTHOQUINONE METHYLTRANSFERASE (db=HMMPanther db_id=PTHR10108:SF15 from=4 to=178 evalue=2.6e-31)
METHYLTRANSFERASE (db=HMMPanther db_id=PTHR10108 from=4 to=178 evalue=2.6e-31)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=2 to=177 evalue=5.9e-31)
Displaying 15 items

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