ggKbase home page

ACD5_46

Alias: ACD5_34157.8307.9

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD5_46_1

Not on your lists

comp(173..706)
DNA (534bp) protein (178aa)
seg (db=Seg db_id=seg from=95 to=106)
transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=48)
Uncharacterized protein {ECO:0000313|EMBL:EKE25443.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_46_2

Not on your lists

comp(867..2321)
DNA (1455bp) protein (485aa)
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4)
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W211_DESAS (db=UNIREF evalue=1.0e-142 bit_score=510.0 identity=56.02 coverage=96.0824742268041)
seg (db=Seg db_id=seg from=144 to=162)
ACD5_46_3

Not on your lists

comp(2473..2760)
DNA (288bp) protein (96aa)
gatC; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C (EC:6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit C (Fragment) n=1 Tax=Heliobacillus mobilis RepID=Q8GE48_HELMO (db=UNIREF evalue=3.0e-13 bit_score=77.4 identity=38.3 coverage=94.7916666666667)
Glu-tRNAGln amidotransferase C subunit (db=superfamily db_id=SSF141000 from=1 to=94 evalue=2.3e-22)
gatC: glutamyl-tRNA(Gln) and/or aspartyl-tRN (db=HMMTigr db_id=TIGR00135 from=2 to=95 evalue=4.6e-18 interpro_id=IPR003837 interpro_description=Glu-tRNAGln amidotransferase, C subunit GO=Biological Process: regulation of translational fidelity (GO:0006450))
ACD5_46_4

Not on your lists

comp(2880..3845)
DNA (966bp) protein (322aa)
DNA ligase LigA
DNA ligase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HME7_9FIRM (db=UNIREF evalue=2.0e-61 bit_score=239.0 identity=43.75 coverage=92.2360248447205)
seg (db=Seg db_id=seg from=273 to=286)
coiled-coil (db=Coil db_id=coil from=172 to=193 evalue=NA)
ACD5_46_5

Not on your lists

comp(5073..6215)
DNA (1143bp) protein (381aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=186 to=200)
N_methyl (db=HMMPfam db_id=PF07963 from=10 to=28 evalue=0.00019 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=9 to=32 evalue=0.0005 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
ACD5_46_6

Not on your lists

comp(6226..6729)
DNA (504bp) protein (168aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=8 to=31 evalue=0.012 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
Uncharacterized protein {ECO:0000313|EMBL:EKE25442.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_46_7
GWC1_OD1_38_22, Parcubacteria, Bacteria

Not on your lists

comp(6740..7279)
DNA (540bp) protein (180aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=163 to=177)
Pili subunits (db=superfamily db_id=SSF54523 from=8 to=63 evalue=8.4e-08)
N_methyl (db=HMMPfam db_id=PF07963 from=6 to=24 evalue=5.7e-05 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
ACD5_46_8

Not on your lists

comp(7291..8091)
DNA (801bp) protein (267aa)
type IV prepilin leader peptidase PilD
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=95 to=117)
seg (db=Seg db_id=seg from=3 to=13)
ACD5_46_9

Not on your lists

comp(8178..8345)
DNA (168bp) protein (56aa)
8178..8345 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE25440.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 9 items

View Taxonomy