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ACD5_135

Alias: ACD5_61862.4124.7

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD5_135_1
GWC2_OD1-i_37_82, Moranbacteria, Parcubacteria, Bacteria

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1..297
DNA (297bp) protein (99aa)
recA; recombinase A
seg (db=Seg db_id=seg from=3 to=17)
DNA REPAIR PROTEIN RECA (db=HMMPanther db_id=PTHR22942:SF1 from=1 to=94 evalue=8.2e-36 interpro_id=IPR013765 interpro_description=DNA recombination and repair protein RecA GO=Molecular Function: single-stranded DNA binding (GO:0003697), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER (db=HMMPanther db_id=PTHR22942 from=1 to=94 evalue=8.2e-36)
ACD5_135_2

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580..720
DNA (141bp) protein (47aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=23 to=45)
Uncharacterized protein {ECO:0000313|EMBL:EKE25084.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_135_3
GWC1_OD1_38_22, Parcubacteria, Bacteria

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799..1536
DNA (738bp) protein (246aa)
seg (db=Seg db_id=seg from=141 to=160)
transmembrane_regions (db=TMHMM db_id=tmhmm from=197 to=228)
transmembrane_regions (db=TMHMM db_id=tmhmm from=139 to=161)
seg (db=Seg db_id=seg from=202 to=221)
ACD5_135_4

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comp(1643..2200)
DNA (558bp) protein (186aa)
translation elongation factor P
efp: translation elongation factor P (db=HMMTigr db_id=TIGR00038 from=2 to=185 evalue=5.5e-90 interpro_id=IPR011768 interpro_description=Translation elongation factor P GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: cytoplasm (GO:0005737), Biological Process: translational elongation (GO:0006414))
Translation elongation factor P (db=HMMPIR db_id=PIRSF005901 from=1 to=185 evalue=4.4e-54 interpro_id=IPR020599 interpro_description=Translation elongation factor P/YeiP)
no description (db=HMMSmart db_id=SM00841 from=129 to=184 evalue=2.1e-26 interpro_id=IPR015365 interpro_description=Elongation factor P, C-terminal)
ACD5_135_5

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comp(2292..2498)
DNA (207bp) protein (69aa)
rpsR; 30S ribosomal protein S18
30S ribosomal protein S18 n=2 Tax=Granulicatella RepID=C8NI08_9LACT (db=UNIREF evalue=3.0e-15 bit_score=84.0 identity=58.73 coverage=89.8550724637681)
30S RIBOSOMAL PROTEIN S18 (db=HMMPanther db_id=PTHR13479:SF16 from=2 to=68 evalue=4.3e-23)
30S RIBOSOMAL PROTEIN S18 (db=HMMPanther db_id=PTHR13479 from=2 to=68 evalue=4.3e-23 interpro_id=IPR001648 interpro_description=Ribosomal protein S18 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD5_135_6
GWD2_OD1_38_11, Parcubacteria, Bacteria

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comp(2669..3157)
DNA (489bp) protein (163aa)
single-strand binding protein
Single-stranded DNA-binding protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DRP8_EIKCO (db=UNIREF evalue=4.0e-29 bit_score=130.0 identity=57.55 coverage=62.5766871165644)
seg (db=Seg db_id=seg from=116 to=138)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=162 evalue=1.1e-42 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
ACD5_135_7

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comp(3252..3809)
DNA (558bp) protein (186aa)
seg (db=Seg db_id=seg from=129 to=172)
Ribosomal_S6 (db=HMMPfam db_id=PF01250 from=2 to=103 evalue=9.5e-11 interpro_id=IPR000529 interpro_description=Ribosomal protein S6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
Ribosomal protein S6 (db=superfamily db_id=SSF54995 from=1 to=106 evalue=1.7e-10 interpro_id=IPR000529 interpro_description=Ribosomal protein S6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
no description (db=Gene3D db_id=G3DSA:3.30.70.60 from=1 to=116 evalue=3.4e-10 interpro_id=IPR014717 interpro_description=Translation elongation factor EF1B/ribosomal protein S6)
Displaying 7 items

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