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ACD5_153

Alias: ACD5_31487.5067.10

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD5_153_1

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comp(71..721)
DNA (651bp) protein (217aa)
30S ribosomal protein S3
seg (db=Seg db_id=seg from=73 to=84)
RIBOSOMAL_S3 (db=PatternScan db_id=PS00548 from=167 to=201 evalue=0.0 interpro_id=IPR018280 interpro_description=Ribosomal protein S3, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsC_bact: ribosomal protein S3 (db=HMMTigr db_id=TIGR01009 from=1 to=215 evalue=9.8e-98 interpro_id=IPR005704 interpro_description=Ribosomal protein S3, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD5_153_2

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comp(763..1341)
DNA (579bp) protein (193aa)
LSU ribosomal protein L22p (L17e)
seg (db=Seg db_id=seg from=50 to=61)
seg (db=Seg db_id=seg from=163 to=176)
coiled-coil (db=Coil db_id=coil from=108 to=158 evalue=NA)
ACD5_153_3

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comp(1413..1751)
DNA (339bp) protein (113aa)
30S ribosomal protein S19
seg (db=Seg db_id=seg from=91 to=112)
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=51 to=75 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
rpsS_bact: ribosomal protein S19 (db=HMMTigr db_id=TIGR01050 from=1 to=90 evalue=4.7e-49 interpro_id=IPR005732 interpro_description=Ribosomal protein S19, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD5_153_4

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comp(1821..1982)
DNA (162bp) protein (54aa)
50S ribosomal protein L2
Ribosomal protein L2 n=2 Tax=Monsonia RepID=B7T3T5_9ROSI (db=UNIREF evalue=2.0e-15 bit_score=84.7 identity=73.08 coverage=94.4444444444444)
RIBOSOMAL PROTEIN L2 (db=HMMPanther db_id=PTHR13691 from=1 to=50 evalue=5.0e-19 interpro_id=IPR002171 interpro_description=Ribosomal protein L2 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L2 (db=HMMPanther db_id=PTHR13691:SF5 from=1 to=50 evalue=5.0e-19 interpro_id=IPR005880 interpro_description=Ribosomal protein L2, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934), Molecular Function: transferase activity (GO:0016740))
ACD5_153_5

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comp(2770..2997)
DNA (228bp) protein (76aa)
seg (db=Seg db_id=seg from=28 to=42)
seg (db=Seg db_id=seg from=5 to=20)
Ribosomal proteins S24e, L23 and L15e (db=superfamily db_id=SSF54189 from=1 to=74 evalue=4.3e-17 interpro_id=IPR012678 interpro_description=Ribosomal protein L23/L15e, core GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.70.330 from=1 to=74 evalue=5.5e-17 interpro_id=IPR012677 interpro_description=Nucleotide-binding, alpha-beta plait GO=Molecular Function: nucleotide binding (GO:0000166))
ACD5_153_6

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comp(3238..3867)
DNA (630bp) protein (210aa)
rplD; 50S ribosomal protein L4
Ribosomal protein L4 (db=superfamily db_id=SSF52166 from=2 to=208 evalue=1.2e-58 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L4 (db=HMMPfam db_id=PF00573 from=18 to=206 evalue=7.1e-54 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L4 (db=HMMPanther db_id=PTHR10746:SF2 from=19 to=207 evalue=3.4e-50 interpro_id=IPR015498 interpro_description=Ribosomal protein L4)
ACD5_153_7

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comp(3916..4476)
DNA (561bp) protein (187aa)
50S ribosomal protein L3
L3_bact: 50S ribosomal protein L3 (db=HMMTigr db_id=TIGR03625 from=4 to=185 evalue=1.7e-69 interpro_id=IPR019927 interpro_description=Ribosomal protein L3, bacterial/organelle-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L3 (db=HMMPanther db_id=PTHR11229 from=1 to=185 evalue=1.8e-56)
Translation proteins (db=superfamily db_id=SSF50447 from=1 to=185 evalue=2.9e-56 interpro_id=IPR009000 interpro_description=Translation elongation/initiation factor/Ribosomal, beta-barrel)
ACD5_153_8

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comp(4679..5014)
DNA (336bp) protein (112aa)
30S ribosomal protein S10
RIBOSOMAL_S10 (db=PatternScan db_id=PS00361 from=38 to=53 evalue=0.0 interpro_id=IPR018268 interpro_description=Ribosomal protein S10, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsJ_bact: ribosomal protein S10 (db=HMMTigr db_id=TIGR01049 from=13 to=111 evalue=5.0e-57 interpro_id=IPR005731 interpro_description=Ribosomal protein S10 subgroup GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER (db=HMMPanther db_id=PTHR11700 from=14 to=111 evalue=9.8e-50 interpro_id=IPR001848 interpro_description=Ribosomal protein S10 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying 8 items

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