ggKbase home page

ACD5_176

Alias: ACDUNK_73408.24200.11

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD5_176_1
ACD5, ACD5, ACD5, ACD5, Parcubacteria, Bacteria

Not on your lists

comp(1..690)
DNA (690bp) protein (230aa)
oxaAA; sec-independent factor for membrane protein insertion (YidC/spoiiij family); K03217 preprotein translocase subunit YidC (db=KEGG evalue=3.0e-19 bit_score=98.2 identity=33.83 coverage=78.2608695652174)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=185 to=207)
transmembrane_regions (db=TMHMM db_id=tmhmm from=129 to=151)
ACD5_176_2
ACD5, ACD5, ACD5, ACD5, Parcubacteria, Bacteria

Not on your lists

comp(802..1275)
DNA (474bp) protein (158aa)
single-stranded nucleic acid-binding R3H domain-containing protein; K06346 spoIIIJ-associated protein (db=KEGG evalue=2.0e-18 bit_score=94.7 identity=35.53 coverage=91.1392405063291)
seg (db=Seg db_id=seg from=95 to=105)
no description (db=HMMSmart db_id=SM00393 from=74 to=153 evalue=6.3e-11 interpro_id=IPR001374 interpro_description=Single-stranded nucleic acid binding R3H GO=Molecular Function: nucleic acid binding (GO:0003676))
R3H (db=HMMPfam db_id=PF01424 from=104 to=152 evalue=1.8e-09 interpro_id=IPR001374 interpro_description=Single-stranded nucleic acid binding R3H GO=Molecular Function: nucleic acid binding (GO:0003676))
ACD5_176_3
ACD5, ACD5, ACD5, ACD5, Parcubacteria, Bacteria

Not on your lists

comp(1726..2760)
DNA (1035bp) protein (345aa)
heteropolysaccharide repeat-containing protein (db=KEGG evalue=4.0e-30 bit_score=135.0 identity=31.07 coverage=86.9565217391304)
transmembrane_regions (db=TMHMM db_id=tmhmm from=228 to=247)
transmembrane_regions (db=TMHMM db_id=tmhmm from=252 to=274)
transmembrane_regions (db=TMHMM db_id=tmhmm from=287 to=304)
ACD5_176_4
ACD5, ACD5, ACD5, ACD5, Parcubacteria, Bacteria

Not on your lists

comp(2800..3678)
DNA (879bp) protein (293aa)
glycosyl transferase family protein; K07011 (db=KEGG evalue=7.0e-45 bit_score=184.0 identity=40.28 coverage=71.6723549488055)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=243 evalue=2.2e-48)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=8 to=259 evalue=2.8e-32)
Glycos_transf_2 (db=HMMPfam db_id=PF00535 from=12 to=181 evalue=1.4e-25 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
ACD5_176_5
ACD5, ACD5, ACD5, ACD5, Parcubacteria, Bacteria

Not on your lists

comp(3703..4470)
DNA (768bp) protein (256aa)
glycosyl transferase, family 2, putative (EC:2.4.1.-); K07011 (db=KEGG evalue=1.0e-29 bit_score=133.0 identity=31.58 coverage=94.140625)
seg (db=Seg db_id=seg from=245 to=255)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=254 evalue=4.4e-38)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=1 to=224 evalue=1.4e-21)
ACD5_176_6
ACD5, ACD5, ACD5, ACD5, Parcubacteria, Bacteria

Not on your lists

comp(4475..5770)
DNA (1296bp) protein (432aa)
ExoQ family exopolysaccharide biosynthesis membrane protein (db=KEGG evalue=3.0e-07 bit_score=60.1 identity=28.12 coverage=54.3981481481482)
transmembrane_regions (db=TMHMM db_id=tmhmm from=164 to=181)
transmembrane_regions (db=TMHMM db_id=tmhmm from=202 to=219)
transmembrane_regions (db=TMHMM db_id=tmhmm from=239 to=261)
ACD5_176_7
ACD5, ACD5, ACD5, ACD5, Parcubacteria, Bacteria

Not on your lists

comp(5751..6956)
DNA (1206bp) protein (402aa)
O-antigen polymerase (db=KEGG evalue=7.0e-12 bit_score=75.5 identity=24.05 coverage=57.7114427860697)
O-antigen polymerase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C2X7_SPHTD (db=UNIREF evalue=7.0e-12 bit_score=75.5 identity=24.05 coverage=57.7114427860697)
transmembrane_regions (db=TMHMM db_id=tmhmm from=152 to=174)
transmembrane_regions (db=TMHMM db_id=tmhmm from=189 to=211)
ACD5_176_8
GWD2_OD1_38_11, Parcubacteria, Bacteria

Not on your lists

comp(6919..7980)
DNA (1062bp) protein (354aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=184 to=206)
transmembrane_regions (db=TMHMM db_id=tmhmm from=150 to=172)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
seg (db=Seg db_id=seg from=100 to=114)
ACD5_176_9

Not on your lists

comp(11451..12080)
DNA (630bp) protein (210aa)
seg (db=Seg db_id=seg from=2 to=15)
transmembrane_regions (db=TMHMM db_id=tmhmm from=186 to=205)
transmembrane_regions (db=TMHMM db_id=tmhmm from=164 to=181)
transmembrane_regions (db=TMHMM db_id=tmhmm from=140 to=159)
ACD5_176_10
GWD2_OD1_38_11, Parcubacteria, Bacteria

Not on your lists

comp(12513..12983)
DNA (471bp) protein (157aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=131 to=153)
transmembrane_regions (db=TMHMM db_id=tmhmm from=89 to=111)
transmembrane_regions (db=TMHMM db_id=tmhmm from=60 to=82)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=40)
ACD5_176_11
GWC1_OD1_38_22, Parcubacteria, Bacteria

Not on your lists

comp(12968..13318)
DNA (351bp) protein (117aa)
TraR/DksA family transcriptional regulator
coiled-coil (db=Coil db_id=coil from=8 to=29 evalue=NA)
seg (db=Seg db_id=seg from=10 to=19)
coiled-coil (db=Coil db_id=coil from=67 to=88 evalue=NA)
ACD5_176_12
GWD2_OD1_38_11, Parcubacteria, Bacteria

Not on your lists

comp(13395..13811)
DNA (417bp) protein (139aa)
seg (db=Seg db_id=seg from=108 to=119)
seg (db=Seg db_id=seg from=41 to=54)
seg (db=Seg db_id=seg from=89 to=101)
UPF0102 (db=HMMPfam db_id=PF02021 from=13 to=106 evalue=4.1e-22 interpro_id=IPR003509 interpro_description=Uncharacterised protein family UPF0102)
ACD5_176_13
GWC2_TM7_48_9, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(14649..16136)
DNA (1488bp) protein (496aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=125 to=147)
seg (db=Seg db_id=seg from=454 to=462)
seg (db=Seg db_id=seg from=125 to=146)
seg (db=Seg db_id=seg from=112 to=124)
ACD5_176_14
GWC1_OD1_38_22, Parcubacteria, Bacteria

Not on your lists


comp(16292..18397)
DNA (2106bp) protein (702aa)
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSC0_9FIRM (db=UNIREF evalue=0.0 bit_score=721.0 identity=55.91 coverage=97.7207977207977)
coiled-coil (db=Coil db_id=coil from=264 to=285 evalue=NA)
seg (db=Seg db_id=seg from=132 to=143)
ACD5_176_15
GWC1_OD1_38_22, Parcubacteria, Bacteria

Not on your lists


comp(19565..19834)
DNA (270bp) protein (90aa)
rpsO; 30S ribosomal protein S15
seg (db=Seg db_id=seg from=37 to=48)
RIBOSOMAL_S15 (db=PatternScan db_id=PS00362 from=39 to=69 evalue=0.0 interpro_id=IPR000589 interpro_description=Ribosomal protein S15 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
S15_bact: ribosomal protein S15 (db=HMMTigr db_id=TIGR00952 from=4 to=89 evalue=2.0e-39 interpro_id=IPR005290 interpro_description=Ribosomal protein S15, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD5_176_16
GWC2_OD1-i_37_82, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(19972..20265)
DNA (294bp) protein (98aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ45630.1}; TaxID=1618698 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWC2_37_82.;"
ACD5_176_17
ACD5, ACD5, ACD5, ACD5, Parcubacteria, Bacteria

Not on your lists

comp(20326..21894)
DNA (1569bp) protein (523aa)
hypothetical protein; K04040 chlorophyll synthase [EC:2.5.1.62] (db=KEGG evalue=2.0e-08 bit_score=64.3 identity=29.82 coverage=29.4455066921606)
transmembrane_regions (db=TMHMM db_id=tmhmm from=221 to=243)
transmembrane_regions (db=TMHMM db_id=tmhmm from=259 to=281)
transmembrane_regions (db=TMHMM db_id=tmhmm from=285 to=307)
ACD5_176_18
GWC1_OD1_38_22, Parcubacteria, Bacteria

Not on your lists

comp(21899..23368)
DNA (1470bp) protein (490aa)
polyA polymerase
polyA polymerase
PolyA polymerase n=2 Tax=Brachyspira RepID=C0R197_BRAHW (db=UNIREF evalue=5.0e-103 bit_score=379.0 identity=43.53 coverage=91.0204081632653)
seg (db=Seg db_id=seg from=468 to=483)
ACD5_176_19
ACD5, ACD5, ACD5, ACD5, Parcubacteria, Bacteria

Not on your lists

comp(23646..24236)
DNA (591bp) protein (197aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=160 to=182)
transmembrane_regions (db=TMHMM db_id=tmhmm from=136 to=155)
transmembrane_regions (db=TMHMM db_id=tmhmm from=51 to=70)
transmembrane_regions (db=TMHMM db_id=tmhmm from=19 to=41)
Displaying 19 items

View Taxonomy