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ACD15_25

Alias: ACD15_9693.38404.17

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Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD15_25_1

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comp(138..299)
DNA (162bp) protein (54aa)
seg (db=Seg db_id=seg from=27 to=38)
Ribosomal_L33 (db=HMMPfam db_id=PF00471 from=9 to=53 evalue=1.6e-15 interpro_id=IPR001705 interpro_description=Ribosomal protein L33 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Zn-binding ribosomal proteins (db=superfamily db_id=SSF57829 from=2 to=53 evalue=4.5e-15 interpro_id=IPR011332 interpro_description=Ribosomal protein, zinc-binding domain GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpmG_bact: ribosomal protein L33 (db=HMMTigr db_id=TIGR01023 from=1 to=53 evalue=5.4e-10 interpro_id=IPR001705 interpro_description=Ribosomal protein L33 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD15_25_2

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comp(603..1199)
DNA (597bp) protein (199aa)
hypothetical protein (db=KEGG evalue=5.0e-08 bit_score=60.8 identity=28.31 coverage=72.8643216080402)
seg (db=Seg db_id=seg from=6 to=19)
Uncharacterized protein {ECO:0000313|EMBL:EKE10618.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein alias=ACD15_9693.38404.17G0002,ACD15_9693.38404.17_2,ACD15_C00025G00002 id=8525 tax=ACD15 species=Thermomonospora curvata genus=Thermomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria organism_group=OD1-i organism_desc=OD1-i
ACD15_25_3

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comp(1593..2351)
DNA (759bp) protein (253aa)
seg (db=Seg db_id=seg from=100 to=111)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
TPR-like (db=superfamily db_id=SSF48452 from=195 to=251 evalue=8.6e-08)
TPR_2 (db=HMMPfam db_id=PF07719 from=203 to=235 evalue=1.1e-05 interpro_id=IPR013105 interpro_description=Tetratricopeptide TPR2)
ACD15_25_4

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comp(2355..3131)
DNA (777bp) protein (259aa)
yaaT; Stage 0 sporulation protein YaaT
PSP1 domain protein n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A326_NATTJ (db=UNIREF evalue=2.0e-44 bit_score=182.0 identity=41.2 coverage=92.6640926640927)
coiled-coil (db=Coil db_id=coil from=80 to=101 evalue=NA)
coiled-coil (db=Coil db_id=coil from=32 to=53 evalue=NA)
ACD15_25_5

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comp(3137..3721)
DNA (585bp) protein (195aa)
translation elongation factor Ts
EF_TS_1 (db=PatternScan db_id=PS01126 from=10 to=25 evalue=0.0 interpro_id=IPR018101 interpro_description=Translation elongation factor Ts, conserved site GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
Elongation factor Ts (EF-Ts), dimerisation domain (db=superfamily db_id=SSF54713 from=55 to=194 evalue=3.3e-50 interpro_id=IPR014039 interpro_description=Translation elongation factor EFTs/EF1B, dimerisation GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
ELONGATION FACTOR TS (db=HMMPanther db_id=PTHR11741 from=5 to=194 evalue=1.1e-40 interpro_id=IPR001816 interpro_description=Translation elongation factor EFTs/EF1B GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
ACD15_25_6

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comp(3857..4705)
DNA (849bp) protein (283aa)
rpsB; 30S ribosomal protein S2
seg (db=Seg db_id=seg from=263 to=282)
seg (db=Seg db_id=seg from=177 to=185)
RIBOSOMAL_S2_2 (db=PatternScan db_id=PS00963 from=196 to=220 evalue=0.0 interpro_id=IPR018130 interpro_description=Ribosomal protein S2, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD15_25_7

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4996..5280
DNA (285bp) protein (95aa)
50S ribosomal protein L31
seg (db=Seg db_id=seg from=69 to=81)
RIBOSOMAL_L31 (db=PatternScan db_id=PS01143 from=35 to=56 evalue=0.0 interpro_id=IPR002150 interpro_description=Ribosomal protein L31 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L31: ribosomal protein L31 (db=HMMTigr db_id=TIGR00105 from=1 to=67 evalue=1.3e-28 interpro_id=IPR002150 interpro_description=Ribosomal protein L31 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD15_25_8

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comp(5318..6232)
DNA (915bp) protein (305aa)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=64 to=304 evalue=7.3e-20)
Methyltransf_12 (db=HMMPfam db_id=PF08242 from=104 to=194 evalue=3.2e-08 interpro_id=IPR013217 interpro_description=Methyltransferase type 12)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=101 to=282 evalue=6.8e-06)
Uncharacterized protein {ECO:0000313|EMBL:EKE10624.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_25_9

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6314..7375
DNA (1062bp) protein (354aa)
Peptide chain release factor 1 n=1 Tax=Bacillus coagulans 36D1 RepID=C1P8Q9_BACCO (db=UNIREF evalue=3.0e-112 bit_score=408.0 identity=54.02 coverage=98.0225988700565)
peptide chain release factor 1
peptide chain release factor 1
coiled-coil (db=Coil db_id=coil from=74 to=95 evalue=NA)
ACD15_25_10

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comp(7437..8204)
DNA (768bp) protein (256aa)
bacA; UDP-diphosphatase (EC:3.6.1.27)
seg (db=Seg db_id=seg from=102 to=117)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
transmembrane_regions (db=TMHMM db_id=tmhmm from=71 to=90)
ACD15_25_11

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comp(8344..9396)
DNA (1053bp) protein (351aa)
hypothetical protein
seg (db=Seg db_id=seg from=6 to=28)
seg (db=Seg db_id=seg from=58 to=71)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
ACD15_25_12

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comp(9479..9826)
DNA (348bp) protein (116aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
seg (db=Seg db_id=seg from=6 to=32)
seg (db=Seg db_id=seg from=58 to=84)
Uncharacterized protein {ECO:0000313|EMBL:EKE10628.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_25_13

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10109..11875
DNA (1767bp) protein (589aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonyl-tRNA synthetase n=2 Tax=Clostridium carboxidivorans P7 RepID=C6PW03_9CLOT (db=UNIREF evalue=3.0e-173 bit_score=612.0 identity=53.77 coverage=95.7555178268251)
coiled-coil (db=Coil db_id=coil from=82 to=103 evalue=NA)
ACD15_25_14

Not on your lists

11984..13276
DNA (1293bp) protein (431aa)
(dimethylallyl)adenosine tRNA methylthiotransferase MiaB
(dimethylallyl)adenosine tRNA methylthiotransferase MiaB
tRNA-i(6)A37 thiotransferase enzyme MiaB n=1 Tax=Clostridium lentocellum DSM 5427 RepID=D5R1T3_9FIRM (db=UNIREF evalue=9.0e-85 bit_score=317.0 identity=44.52 coverage=93.0394431554524)
seg (db=Seg db_id=seg from=410 to=424)
ACD15_25_15

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comp(13293..15305)
DNA (2013bp) protein (671aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=556 to=575)
transmembrane_regions (db=TMHMM db_id=tmhmm from=533 to=552)
seg (db=Seg db_id=seg from=3 to=14)
ACD15_25_16

Not on your lists

15464..16414
DNA (951bp) protein (317aa)
tRNA delta(2)-isopentenylpyrophosphate transferase
seg (db=Seg db_id=seg from=263 to=276)
miaA: tRNA delta(2)-isopentenylpyrophosphate (db=HMMTigr db_id=TIGR00174 from=12 to=305 evalue=1.6e-57 interpro_id=IPR018022 interpro_description=tRNA delta(2)-isopentenylpyrophosphate transferase)
IPPT (db=HMMPfam db_id=PF01715 from=45 to=301 evalue=3.7e-55 interpro_id=IPR002627 interpro_description=tRNA isopentenyltransferase GO=Molecular Function: tRNA isopentenyltransferase activity (GO:0004811), Molecular Function: ATP binding (GO:0005524), Biological Process: tRNA processing (GO:0008033))
ACD15_25_17

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comp(16514..17530)
DNA (1017bp) protein (339aa)
DSBA oxidoreductase family protein
DSBA oxidoreductase n=1 Tax=NC10 bacterium 'Dutch sediment' RepID=D5MF76_9BACT (db=UNIREF evalue=2.0e-30 bit_score=136.0 identity=38.01 coverage=48.9675516224189)
seg (db=Seg db_id=seg from=13 to=28)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
ACD15_25_18

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comp(17614..18039)
DNA (426bp) protein (142aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=64 to=81)
seg (db=Seg db_id=seg from=67 to=79)
Uncharacterized protein {ECO:0000313|EMBL:EKE10634.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_25_19

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comp(18137..19165)
DNA (1029bp) protein (343aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=310 to=332)
seg (db=Seg db_id=seg from=4 to=22)
seg (db=Seg db_id=seg from=315 to=328)
Uncharacterized protein {ECO:0000313|EMBL:EKE10635.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_25_20

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comp(19285..19500)
DNA (216bp) protein (72aa)
19285..19500 - (rbs_motif=AAAAA rbs_spacer=15bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE10636.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_25_21

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comp(19639..20115)
DNA (477bp) protein (159aa)
prophage antirepressor
Bro-N (db=HMMPfam db_id=PF02498 from=14 to=111 evalue=5.2e-08 interpro_id=IPR003497 interpro_description=BRO, N-terminal)
Prophage antirepressor {ECO:0000313|EMBL:EKE10637.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
prophage antirepressor alias=ACD15_9693.38404.17G0021,ACD15_9693.38404.17_21,ACD15_C00025G00021 id=8528 tax=ACD15 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=OD1-i organism_desc=OD1-i
ACD15_25_22

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comp(20194..21444)
DNA (1251bp) protein (417aa)
ABC transporter permease
Macrolide export ATP-binding/permease protein MacB n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNK8_9FIRM (db=UNIREF evalue=3.0e-45 bit_score=186.0 identity=35.35 coverage=94.484412470024)
seg (db=Seg db_id=seg from=343 to=360)
seg (db=Seg db_id=seg from=283 to=298)
ACD15_25_23

Not on your lists

comp(21454..22704)
DNA (1251bp) protein (417aa)
MacB-like periplasmic core domain containing protein
Macrolide export ATP-binding/permease protein MacB n=1 Tax=Dialister invisus DSM 15470 RepID=C9LKV6_9FIRM (db=UNIREF evalue=2.0e-64 bit_score=249.0 identity=38.41 coverage=95.2038369304556)
seg (db=Seg db_id=seg from=288 to=303)
seg (db=Seg db_id=seg from=25 to=38)
ACD15_25_24

Not on your lists

comp(22727..23449)
DNA (723bp) protein (241aa)
ABC transporter related-protein n=1 Tax=bacterium Ellin514 RepID=B9XJL4_9BACT (db=UNIREF evalue=2.0e-71 bit_score=272.0 identity=56.54 coverage=97.0954356846473)
ABC transporter ATP-binding protein
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=145 to=159 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=5 to=225 evalue=1.4e-109)
ACD15_25_25

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comp(23505..24518)
DNA (1014bp) protein (338aa)
ABC transporter substrate-binding protein
Efflux transporter, RND family, MFP subunit n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNY3_9FIRM (db=UNIREF evalue=2.0e-29 bit_score=133.0 identity=31.33 coverage=94.9704142011834)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
coiled-coil (db=Coil db_id=coil from=98 to=119 evalue=NA)
ACD15_25_26

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comp(24523..24951)
DNA (429bp) protein (143aa)
hypothetical protein
seg (db=Seg db_id=seg from=53 to=64)
coiled-coil (db=Coil db_id=coil from=117 to=138 evalue=NA)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=2 to=138 evalue=1.4e-25 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
ACD15_25_27

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comp(24961..26679)
DNA (1719bp) protein (573aa)
single-stranded-DNA-specific exonuclease RecJ
single-stranded-DNA-specific exonuclease RecJ
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HMM2_9FIRM (db=UNIREF evalue=2.0e-105 bit_score=387.0 identity=40.25 coverage=97.5567190226876)
seg (db=Seg db_id=seg from=507 to=517)
ACD15_25_28

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comp(26781..28844)
DNA (2064bp) protein (688aa)
acetyl CoA synthetase
acetyl CoA synthetase
Strongly similar to acetyl-CoA synthetase (ADP-forming) gene n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1N5_9BACT (db=UNIREF evalue=1.0e-134 bit_score=484.0 identity=38.23 coverage=99.7093023255814)
seg (db=Seg db_id=seg from=393 to=405)
acetate + ATP + coenzyme A <=> phosphate + acetyl-CoA + ADP Jill Banfield (11/15/12)
formation of acetate, analagous to pt-ack two steps, from acetyl CoA kelly wrighton (11/15/12)
ACD15_25_29

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28985..29203
DNA (219bp) protein (73aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=49 to=71)
Uncharacterized protein {ECO:0000313|EMBL:EKE10645.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_25_30

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comp(29561..30550)
DNA (990bp) protein (330aa)
hypothetical protein
PfkB family kinase n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B2569 (db=UNIREF evalue=2.0e-23 bit_score=113.0 identity=32.76 coverage=82.1212121212121)
seg (db=Seg db_id=seg from=133 to=145)
PFKB_KINASES_1 (db=PatternScan db_id=PS00583 from=55 to=79 evalue=0.0 interpro_id=IPR002173 interpro_description=Carbohydrate/puine kinase, PfkB, conserved site)
ATP + D-ribose = ADP + D-ribose 5-phosphate From PPP Jill Banfield (11/15/12)
Displaying items 1-30 of 36 in total

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