ggKbase home page

ACD15_27

Alias: ACD15_2375.10404.18

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD15_27_1

Not on your lists

comp(1..396)
DNA (396bp) protein (132aa)
seg (db=Seg db_id=seg from=62 to=87)
seg (db=Seg db_id=seg from=44 to=48)
seg (db=Seg db_id=seg from=11 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=30)
ACD15_27_2

Not on your lists

comp(501..860)
DNA (360bp) protein (120aa)
seg (db=Seg db_id=seg from=92 to=105)
seg (db=Seg db_id=seg from=55 to=63)
transmembrane_regions (db=TMHMM db_id=tmhmm from=86 to=108)
transmembrane_regions (db=TMHMM db_id=tmhmm from=51 to=73)
ACD15_27_3

Not on your lists

comp(934..1575)
DNA (642bp) protein (214aa)
seg (db=Seg db_id=seg from=196 to=203)
seg (db=Seg db_id=seg from=98 to=112)
seg (db=Seg db_id=seg from=28 to=44)
transmembrane_regions (db=TMHMM db_id=tmhmm from=186 to=205)
ACD15_27_4

Not on your lists

comp(1631..2053)
DNA (423bp) protein (141aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=59 to=81)
transmembrane_regions (db=TMHMM db_id=tmhmm from=94 to=116)
Uncharacterized protein {ECO:0000313|EMBL:EKE11380.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_27_5

Not on your lists

comp(2083..2343)
DNA (261bp) protein (87aa)
2083..2343 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE11381.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_27_6

Not on your lists

comp(3555..4127)
DNA (573bp) protein (191aa)
type 11 methyltransferase
Methyltransferase type 11 n=1 Tax=Ethanoligenens harbinense YUAN-3 RepID=D3NMY5_9FIRM (db=UNIREF evalue=5.0e-21 bit_score=103.0 identity=31.21 coverage=86.9109947643979)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=21 to=189 evalue=1.6e-26)
METHYLTRANSFERASE (db=HMMPanther db_id=PTHR10108 from=12 to=177 evalue=1.4e-21)
ACD15_27_7

Not on your lists

4621..5139
DNA (519bp) protein (173aa)
hypothetical protein
seg (db=Seg db_id=seg from=56 to=67)
seg (db=Seg db_id=seg from=12 to=33)
transmembrane_regions (db=TMHMM db_id=tmhmm from=11 to=33)
ACD15_27_8

Not on your lists

5140..6921
DNA (1782bp) protein (594aa)
infB; translation initiation factor IF-2
infB; translation initiation factor IF-2
Translation initiation factor IF-2 n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=IF2_CARHZ (db=UNIREF evalue=1.0e-124 bit_score=450.0 identity=45.29 coverage=97.979797979798)
seg (db=Seg db_id=seg from=63 to=73)
ACD15_27_9

Not on your lists

6958..7296
DNA (339bp) protein (113aa)
RBFA (db=HMMPfam db_id=PF02033 from=4 to=106 evalue=1.9e-19 interpro_id=IPR000238 interpro_description=Ribosome-binding factor A GO=Biological Process: rRNA processing (GO:0006364))
Ribosome-binding factor A, RbfA (db=superfamily db_id=SSF89919 from=5 to=100 evalue=1.3e-17 interpro_id=IPR000238 interpro_description=Ribosome-binding factor A GO=Biological Process: rRNA processing (GO:0006364))
no description (db=Gene3D db_id=G3DSA:3.30.300.20 from=4 to=112 evalue=1.2e-15 interpro_id=IPR015946 interpro_description=K homology-like, alpha/beta)
RBFA_ZYMMO_Q5NQ28; (db=BlastProDom db_id=PD007327 from=7 to=93 evalue=2.0e-06 interpro_id=IPR000238 interpro_description=Ribosome-binding factor A GO=Biological Process: rRNA processing (GO:0006364))
ACD15_27_10

Not on your lists

7334..8308
DNA (975bp) protein (325aa)
MgpA protein
DHH phosphoesterases (db=superfamily db_id=SSF64182 from=23 to=323 evalue=2.4e-55)
TRNA-NUCLEOTIDYLTRANSFERASE/POLY(A) POLYMERASE FAMILY MEMBER (db=HMMPanther db_id=PTHR13734 from=14 to=318 evalue=7.6e-48)
POLYA POLYMERASE (db=HMMPanther db_id=PTHR13734:SF4 from=14 to=318 evalue=7.6e-48)
ACD15_27_11

Not on your lists

8373..9197
DNA (825bp) protein (275aa)
apurinic endonuclease Apn1 (EC:3.1.21.2)
AP_NUCLEASE_F2_3 (db=PatternScan db_id=PS00731 from=209 to=225 evalue=0.0 interpro_id=IPR018246 interpro_description=AP endonuclease, family 2, zinc binding site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: endonuclease activity (GO:0004519), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281), Molecular Function: zinc ion binding (GO:0008270))
no description (db=HMMSmart db_id=SM00518 from=2 to=272 evalue=6.9e-73 interpro_id=IPR001719 interpro_description=Endodeoxyribonuclease IV GO=Molecular Function: DNA binding (GO:0003677), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281), Molecular Function: zinc ion binding (GO:0008270), Molecular Function: deoxyribonuclease IV (phage-T4-induced) activity (GO:0008833))
no description (db=Gene3D db_id=G3DSA:3.20.20.150 from=1 to=260 evalue=4.6e-69 interpro_id=IPR013022 interpro_description=Xylose isomerase-like, TIM barrel domain)
ACD15_27_12

Not on your lists

9222..9755
DNA (534bp) protein (178aa)
hypothetical protein
Metallo-dependent phosphatases (db=superfamily db_id=SSF56300 from=1 to=177 evalue=2.0e-28)
no description (db=Gene3D db_id=G3DSA:3.60.21.10 from=1 to=175 evalue=3.6e-19)
yfcE: phosphodiesterase, MJ0936 family (db=HMMTigr db_id=TIGR00040 from=1 to=171 evalue=6.2e-10 interpro_id=IPR000979 interpro_description=Phosphodiesterase MJ0936)
ACD15_27_13

Not on your lists

9802..10386
DNA (585bp) protein (195aa)
Phage SPO1 DNA polymerase-related protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS51_9BACT (db=UNIREF evalue=8.0e-54 bit_score=213.0 identity=55.21 coverage=96.4102564102564)
Phage SPO1 DNA polymerase-related protein
UDG_fam4: uracil-DNA glycosylase, family (db=HMMTigr db_id=TIGR00758 from=17 to=189 evalue=2.9e-67 interpro_id=IPR005273 interpro_description=Phage SPO1 DNA polymerase-related protein)
no description (db=Gene3D db_id=G3DSA:3.40.470.10 from=5 to=187 evalue=3.0e-55 interpro_id=IPR005122 interpro_description=Uracil-DNA glycosylase-like)
Displaying 13 items

View Taxonomy