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ACD15_21_19

Organism: ACD15

near complete RP 50 / 55 MC: 14 BSCG 47 / 51 MC: 5 ASCG 0 / 38
Location: 15415..15963

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 42.3
  • Coverage: 175.0
  • Bit_score: 143
  • Evalue 6.20e-32
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=17 to=179 evalue=5.1e-39 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMTigr
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 5.10e-39
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=2 to=110 evalue=1.3e-21 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: superfamily
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 1.30e-21

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Taxonomy

uncultured bacterium → Bacteria

Sequences

DNA sequence
Length: 549
GTGGAATTGACCGATAATGAGCTAGTGGAGTTGGCTAGGAAAAATACGGATATTTTTGGAAAATTGGTGGAAAGATACCAACAGCGCCTTTTTCGCTATGTACGGAGAATTTCCTATTTTGCCGAAGAAGATGCTCGGGATATTGTGCAGGAGGTTTTCATCAAGATTTATCTGAGCTTGAATATTTTCGATGGGGATTTGAAGTTTTCCACTTGGGCTTATCAGATAACTAGAAATGCCACTATTGATGCTATCCGTAAAAAACAGTCCCGACCGCAAACTATTTGCCTAGAGGCGGCAGATGTGGTCAAAATCATGAGGACGGATGATGATATTCAAGTCAGCTTGGAGACCCAGAGCGATATAGAGAAGATGAAAAAAATAATCGATGGACTTCCTTATAAATATCGGGAAGTGATAATATTGCGTTTTTTAGAGGACAAGGATTATGAAGAAATCATGGACATCATAAAAAAGCCCAAAGGCACGGTGGCTTCGCTTATCAATAGAGGAAAAAATATGATTAAAGATAAATTTATTCTAAACTAA
PROTEIN sequence
Length: 183
VELTDNELVELARKNTDIFGKLVERYQQRLFRYVRRISYFAEEDARDIVQEVFIKIYLSLNIFDGDLKFSTWAYQITRNATIDAIRKKQSRPQTICLEAADVVKIMRTDDDIQVSLETQSDIEKMKKIIDGLPYKYREVIILRFLEDKDYEEIMDIIKKPKGTVASLINRGKNMIKDKFILN*