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ACD15_21

Alias: ACD15_3230.29877.16

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Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD15_21_1

Not on your lists

91..348
DNA (258bp) protein (86aa)
Excinuclease ABC C subunit domain protein n=1 Tax=Thermoanaerobacter brockii subsp. finnii Ako-1 RepID=C5UD93_THEBR (db=UNIREF evalue=3.0e-10 bit_score=67.4 identity=48.81 coverage=93.0232558139535)
GIY-YIG (db=HMMPfam db_id=PF01541 from=1 to=68 evalue=1.2e-10 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=1 to=73 evalue=4.5e-09 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
Excinuclease ABC C subunit protein {ECO:0000313|EMBL:EKE11236.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_21_2

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comp(394..540)
DNA (147bp) protein (49aa)
seg (db=Seg db_id=seg from=22 to=42)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=38)
Uncharacterized protein {ECO:0000313|EMBL:EKE11237.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
ACD15_21_3

Not on your lists

comp(560..916)
DNA (357bp) protein (119aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=78 to=100)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=68)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=34)
ACD15_21_4

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comp(984..1151)
DNA (168bp) protein (56aa)
984..1151 - (rbs_motif=TAATA rbs_spacer=8bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE11239.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
ACD15_21_5

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1465..2415
DNA (951bp) protein (317aa)
Putative uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BIR8_9GAMM (db=UNIREF evalue=7.0e-27 bit_score=124.0 identity=46.09 coverage=40.0630914826498)
multi-sensor hybrid histidine kinase
coiled-coil (db=Coil db_id=coil from=124 to=145 evalue=NA)
sensory_box: PAS domain S-box (db=HMMTigr db_id=TIGR00229 from=10 to=131 evalue=5.9e-21 interpro_id=IPR000014 interpro_description=PAS GO=Molecular Function: signal transducer activity (GO:0004871), Biological Process: signal transduction (GO:0007165))
ACD15_21_6

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2677..2913
DNA (237bp) protein (79aa)
seg (db=Seg db_id=seg from=2 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
DUF2078 (db=HMMPfam db_id=PF09851 from=7 to=77 evalue=1.5e-22 interpro_id=IPR018649 interpro_description=Protein of unknown function DUF2078, membrane)
Uncharacterized protein {ECO:0000313|EMBL:EKE11241.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_21_7

Not on your lists

comp(3028..4056)
DNA (1029bp) protein (343aa)
glycosyltransferase
Glycosyl transferase, group 1 n=1 Tax=Nodularia spumigena CCY9414 RepID=A0ZGR2_NODSP (db=UNIREF evalue=3.0e-81 bit_score=305.0 identity=44.93 coverage=99.4169096209913)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526:SF7 from=2 to=340 evalue=1.3e-77)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=2 to=340 evalue=1.3e-77)
ACD15_21_8

Not on your lists

4451..5020
DNA (570bp) protein (190aa)
4451..5020 + (rbs_motif=TAA rbs_spacer=5bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE11243.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_21_9

Not on your lists

comp(5196..5297)
DNA (102bp) protein (34aa)
5196..5297 - (rbs_motif=TATTA rbs_spacer=9bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE11244.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_21_10

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comp(5334..5714)
DNA (381bp) protein (127aa)
signal transduction histidine kinase, nitrogen specific, NtrB
CheY-like (db=superfamily db_id=SSF52172 from=3 to=121 evalue=1.2e-26 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=7 to=121 evalue=4.9e-21)
Response_reg (db=HMMPfam db_id=PF00072 from=8 to=111 evalue=5.4e-18 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD15_21_11

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5992..6648
DNA (657bp) protein (219aa)
winged helix family two component transcriptional regulator
Putative Two-component transcriptional regulator; putative transcriptional regulator involved in heavy-metal (Cu/Zn) homeostasis n=1 Tax=NC10 bacterium 'Dutch sediment' RepID=D5MLP3_9BACT (db=UNIREF evalue=1.0e-47 bit_score=192.0 identity=40.83 coverage=97.7168949771689)
CheY-like (db=superfamily db_id=SSF52172 from=1 to=187 evalue=2.8e-38 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=HMMSmart db_id=SM00448 from=1 to=112 evalue=3.6e-35 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD15_21_12

Not on your lists

6783..6893
DNA (111bp) protein (37aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=34)
Uncharacterized protein {ECO:0000313|EMBL:EKE11247.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_21_13

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6906..8372
DNA (1467bp) protein (489aa)
integral membrane sensor signal transduction histidine kinase
transmembrane_regions (db=TMHMM db_id=tmhmm from=191 to=208)
transmembrane_regions (db=TMHMM db_id=tmhmm from=125 to=147)
transmembrane_regions (db=TMHMM db_id=tmhmm from=102 to=121)
ACD15_21_14

Not on your lists

8365..10236
DNA (1872bp) protein (624aa)
seg (db=Seg db_id=seg from=161 to=168)
seg (db=Seg db_id=seg from=138 to=151)
seg (db=Seg db_id=seg from=42 to=53)
seg (db=Seg db_id=seg from=28 to=41)
ACD15_21_15

Not on your lists

comp(10356..12368)
DNA (2013bp) protein (671aa)
putative lipoprotein
seg (db=Seg db_id=seg from=62 to=71)
seg (db=Seg db_id=seg from=4 to=16)
seg (db=Seg db_id=seg from=558 to=574)
ACD15_21_16

Not on your lists

12564..12893
DNA (330bp) protein (110aa)
Co-chaperonin GroES
seg (db=Seg db_id=seg from=2 to=13)
no description (db=HMMSmart db_id=SM00883 from=23 to=108 evalue=8.5e-30 interpro_id=IPR001476 interpro_description=Chaperonin Cpn10, subgroup GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: protein folding (GO:0006457))
GroES-like (db=superfamily db_id=SSF50129 from=20 to=109 evalue=1.4e-24 interpro_id=IPR011032 interpro_description=GroES-like)
ACD15_21_17

Not on your lists

13019..14674
DNA (1656bp) protein (552aa)
groL; 60 kDa chaperonin
groL; 60 kDa chaperonin
60 kDa chaperonin n=11 Tax=Thermoanaerobacteraceae RepID=CH60_THEP3 (db=UNIREF evalue=4.0e-151 bit_score=538.0 identity=58.27 coverage=95.2898550724638)
seg (db=Seg db_id=seg from=126 to=144)
ACD15_21_18

Not on your lists

14848..15297
DNA (450bp) protein (150aa)
DoxX family protein
DoxX family protein n=1 Tax=Haloterrigena turkmenica DSM 5511 RepID=D2S2I2_HALTV (db=UNIREF evalue=1.0e-17 bit_score=92.0 identity=51.22 coverage=81.3333333333333)
seg (db=Seg db_id=seg from=88 to=101)
seg (db=Seg db_id=seg from=45 to=58)
ACD15_21_19

Not on your lists

15415..15963
DNA (549bp) protein (183aa)
ECF subfamily RNA polymerase sigma factor
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=17 to=179 evalue=5.1e-39 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=2 to=110 evalue=1.3e-21 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=6 to=93 evalue=7.3e-18)
ACD15_21_20

Not on your lists

15970..16755
DNA (786bp) protein (262aa)
seg (db=Seg db_id=seg from=2 to=15)
transmembrane_regions (db=TMHMM db_id=tmhmm from=107 to=129)
transmembrane_regions (db=TMHMM db_id=tmhmm from=73 to=95)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
ACD15_21_21

Not on your lists

16886..17449
DNA (564bp) protein (188aa)
seg (db=Seg db_id=seg from=70 to=81)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
coiled-coil (db=Coil db_id=coil from=141 to=162 evalue=NA)
coiled-coil (db=Coil db_id=coil from=105 to=133 evalue=NA)
ACD15_21_22

Not on your lists

17659..18534
DNA (876bp) protein (292aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=12 to=28)
seg (db=Seg db_id=seg from=52 to=62)
Uncharacterized protein {ECO:0000313|EMBL:EKE11222.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_21_23

Not on your lists

comp(18639..20381)
DNA (1743bp) protein (581aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=375 to=389)
Uncharacterized protein {ECO:0000313|EMBL:EKE11223.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_21_24

Not on your lists

20589..20900
DNA (312bp) protein (104aa)
seg (db=Seg db_id=seg from=64 to=77)
no description (db=HMMSmart db_id=SM00418 from=22 to=103 evalue=3.8e-23 interpro_id=IPR001845 interpro_description=HTH transcriptional regulator, ArsR GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=16 to=101 evalue=9.0e-23)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=5 to=103 evalue=1.0e-19 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
ACD15_21_25

Not on your lists

20909..21421
DNA (513bp) protein (171aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=146 to=168)
transmembrane_regions (db=TMHMM db_id=tmhmm from=116 to=133)
transmembrane_regions (db=TMHMM db_id=tmhmm from=82 to=101)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=69)
ACD15_21_26

Not on your lists

21428..21994
DNA (567bp) protein (189aa)
Putative uncharacterized protein n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N3Q2_9GAMM (db=UNIREF evalue=3.0e-42 bit_score=174.0 identity=49.46 coverage=93.1216931216931)
seg (db=Seg db_id=seg from=16 to=25)
coiled-coil (db=Coil db_id=coil from=1 to=22 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE11226.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_21_27

Not on your lists

22012..22314
DNA (303bp) protein (101aa)
redox-active disulfide protein 2
redox_disulf_2: redox-active disulfide (db=HMMTigr db_id=TIGR00412 from=1 to=77 evalue=4.3e-20 interpro_id=IPR005243 interpro_description=Redox-active disulphide protein 2)
no description (db=Gene3D db_id=G3DSA:3.40.30.10 from=1 to=76 evalue=4.6e-19 interpro_id=IPR012335 interpro_description=Thioredoxin fold)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=1 to=76 evalue=2.6e-17 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
ACD15_21_28

Not on your lists

22330..23292
DNA (963bp) protein (321aa)
hypothetical protein
hypothetical protein
Permease n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQT6_9FIRM (db=UNIREF evalue=3.0e-97 bit_score=358.0 identity=55.31 coverage=96.2616822429907)
seg (db=Seg db_id=seg from=38 to=49)
ACD15_21_29

Not on your lists

23405..23716
DNA (312bp) protein (104aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
transmembrane_regions (db=TMHMM db_id=tmhmm from=58 to=77)
ABC transporter transmembrane region (db=superfamily db_id=SSF90123 from=1 to=103 evalue=2.7e-10 interpro_id=IPR011527 interpro_description=ABC transporter, transmembrane domain, type 1 GO=Molecular Function: ATP binding (GO:0005524), Biological Process: transport (GO:0006810), Cellular Component: integral to membrane (GO:0016021), Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626), Biological Process: transmembrane transport (GO:0055085))
ABC_TM1F (db=ProfileScan db_id=PS50929 from=24 to=103 evalue=11.14 interpro_id=IPR017940 interpro_description=ABC transporter integral membrane type 1)
ACD15_21_30

Not on your lists

23910..24593
DNA (684bp) protein (228aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
Uncharacterized protein {ECO:0000313|EMBL:EKE11230.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying items 1-30 of 35 in total

View Taxonomy