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ACD65_1

Alias: ACD51_17733.4150.7

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD65_1_1

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119..487
DNA (369bp) protein (123aa)
Ribosomal protein L22 n=1 Tax=Thermincola sp. JR RepID=D5XA88_9FIRM (db=UNIREF evalue=2.0e-25 bit_score=117.0 identity=55.88 coverage=82.1138211382114)
50S ribosomal protein L22
rplV_bact: ribosomal protein L22 (db=HMMTigr db_id=TIGR01044 from=3 to=105 evalue=2.8e-37 interpro_id=IPR005727 interpro_description=Ribosomal protein L22, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal_L22 (db=HMMPfam db_id=PF00237 from=3 to=105 evalue=7.5e-34 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
removed from v1 concatenation tree kelly wrighton (11/16/12)
ACD65_1_2
PER_GWF2_43_17, Peregrinibacteria, Bacteria

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487..1251
DNA (765bp) protein (255aa)
30S ribosomal protein S3 n=50 Tax=root RepID=RS3_ENTFA (db=UNIREF evalue=3.0e-65 bit_score=251.0 identity=54.33 coverage=80.7843137254902)
30S ribosomal protein S3p
seg (db=Seg db_id=seg from=235 to=248)
RIBOSOMAL_S3 (db=PatternScan db_id=PS00548 from=163 to=197 evalue=0.0 interpro_id=IPR018280 interpro_description=Ribosomal protein S3, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD65_1_3
Peregrinibacteria bacterium GW2011_GWA2_43_8, Peregrinibacteria, Bacteria

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1251..1673
DNA (423bp) protein (141aa)
50S ribosomal protein L16 n=2 Tax=Microcystis aeruginosa RepID=RL16_MICAN (db=UNIREF evalue=3.0e-41 bit_score=170.0 identity=57.97 coverage=95.7446808510638)
rplP; 50S ribosomal protein L16
RIBOSOMAL_L16_1 (db=PatternScan db_id=PS00586 from=61 to=72 evalue=0.0 interpro_id=IPR020798 interpro_description=Ribosomal protein L16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplP_bact: ribosomal protein L16 (db=HMMTigr db_id=TIGR01164 from=2 to=129 evalue=2.6e-70 interpro_id=IPR000114 interpro_description=Ribosomal protein L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD65_1_4
PER_GWF2_43_17, Peregrinibacteria, Bacteria

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1677..1877
DNA (201bp) protein (67aa)
seg (db=Seg db_id=seg from=5 to=18)
Ribosomal_L29 (db=HMMPfam db_id=PF00831 from=4 to=59 evalue=4.9e-07 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L29 (L29p) (db=superfamily db_id=SSF46561 from=2 to=61 evalue=2.6e-06 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Uncharacterized protein {ECO:0000313|EMBL:KKT02463.1}; TaxID=1619068 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_43_17.;"
ACD65_1_5
PER_GWF2_43_17, Peregrinibacteria, Bacteria

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1889..2125
DNA (237bp) protein (79aa)
seg (db=Seg db_id=seg from=23 to=41)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=78 evalue=7.6e-22 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
Ribosomal_S17 (db=HMMPfam db_id=PF00366 from=6 to=73 evalue=8.4e-22 interpro_id=IPR000266 interpro_description=Ribosomal protein S17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER (db=HMMPanther db_id=PTHR10744 from=1 to=78 evalue=2.6e-21 interpro_id=IPR000266 interpro_description=Ribosomal protein S17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD65_1_6
PER_GWF2_43_17, Peregrinibacteria, Bacteria

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2147..2515
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VI21_CLOAI (db=UNIREF evalue=2.0e-44 bit_score=180.0 identity=69.67 coverage=98.3739837398374)
rplN; 50S ribosomal protein L14
RIBOSOMAL_L14 (db=PatternScan db_id=PS00049 from=60 to=86 evalue=0.0 interpro_id=IPR019972 interpro_description=Ribosomal protein L14 conserved site)
rplN_bact: ribosomal protein L14 (db=HMMTigr db_id=TIGR01067 from=1 to=122 evalue=3.8e-76 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
ACD65_1_7
PER_GWF2_43_17, Peregrinibacteria, Bacteria

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2527..2868
DNA (342bp) protein (114aa)
50S ribosomal protein L24
50S ribosomal protein L24 n=6 Tax=Thermotogaceae RepID=RL24_THENN (db=UNIREF evalue=4.0e-16 bit_score=87.0 identity=51.92 coverage=89.4736842105263)
seg (db=Seg db_id=seg from=40 to=52)
RIBOSOMAL_L24 (db=PatternScan db_id=PS01108 from=6 to=23 evalue=0.0 interpro_id=IPR005825 interpro_description=Ribosomal protein L24/L26, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD65_1_8
PER_GWF2_43_17, Peregrinibacteria, Bacteria

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2884..3447
DNA (564bp) protein (188aa)
50S ribosomal protein L5 n=1 Tax=Bdellovibrio bacteriovorus RepID=RL5_BDEBA (db=UNIREF evalue=2.0e-47 bit_score=191.0 identity=53.67 coverage=92.5531914893617)
50S ribosomal protein L5
RIBOSOMAL_L5 (db=PatternScan db_id=PS00358 from=62 to=78 evalue=0.0 interpro_id=IPR020929 interpro_description=Ribosomal protein L5, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
60S RIBOSOMAL PROTEIN L11-RELATED (db=HMMPanther db_id=PTHR11994 from=13 to=187 evalue=8.9e-71 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD65_1_9
PER_GWF2_43_17, Peregrinibacteria, Bacteria

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3463..3687
DNA (225bp) protein (75aa)
hypothetical protein
30S ribosomal protein S14 type Z n=1 Tax=Halothermothrix orenii H 168 RepID=RS14Z_HALOH (db=UNIREF evalue=2.0e-12 bit_score=74.3 identity=64.0 coverage=65.3333333333333)
RIBOSOMAL_S14 (db=PatternScan db_id=PS00527 from=36 to=58 evalue=0.0 interpro_id=IPR018271 interpro_description=Ribosomal protein S14, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S14 (db=HMMPanther db_id=PTHR19836 from=1 to=74 evalue=2.0e-26 interpro_id=IPR001209 interpro_description=Ribosomal protein S14 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD65_1_10
PER_GWF2_43_17, Peregrinibacteria, Bacteria

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3681..4109
DNA (429bp) protein (143aa)
30S ribosomal protein S8
UPI0001D5B336 related cluster n=1 Tax=unknown RepID=UPI0001D5B336 (db=UNIREF evalue=1.0e-30 bit_score=135.0 identity=52.71 coverage=86.7132867132867)
RIBOSOMAL_S8 (db=PatternScan db_id=PS00053 from=112 to=129 evalue=0.0 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S8 (db=HMMPfam db_id=PF00410 from=19 to=142 evalue=1.0e-41 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD65_1_11
unknown

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4119..4184
DNA (66bp) protein (22aa)
4119..4184 + (rbs_motif=TAA rbs_spacer=9bp)
Displaying 11 items

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