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ACD65_34

Alias: ACD65_42502.5975.9

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD65_34_1
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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comp(1..162)
DNA (162bp) protein (54aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=19 to=41)
polysaccharide biosynthesis protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD65_34_2
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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313..1407
DNA (1095bp) protein (365aa)
prfB; peptide chain release factor 2
prfB; peptide chain release factor 2
Peptide chain release factor 2 n=10 Tax=Clostridium perfringens RepID=RF2_CLOPS (db=UNIREF evalue=7.0e-94 bit_score=347.0 identity=48.9 coverage=97.8082191780822)
coiled-coil (db=Coil db_id=coil from=277 to=298 evalue=NA)
ACD65_34_3
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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1429..1923
DNA (495bp) protein (165aa)
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase (db=superfamily db_id=SSF56420 from=1 to=162 evalue=2.8e-46 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
Pep_deformylase (db=HMMPfam db_id=PF01327 from=9 to=154 evalue=3.6e-46 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
POLYPEPTIDE DEFORMYLASE (db=HMMPanther db_id=PTHR10458 from=4 to=148 evalue=6.7e-44 interpro_id=IPR000181 interpro_description=Formylmethionine deformylase GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: translation (GO:0006412), Molecular Function: peptide deformylase activity (GO:0042586))
ACD65_34_4
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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comp(1920..2876)
DNA (957bp) protein (319aa)
pentaglycine interpeptide bridge formation protein
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=136 to=315 evalue=2.3e-43 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=128 to=289 evalue=3.3e-42 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
FemAB (db=HMMPfam db_id=PF02388 from=7 to=213 evalue=3.2e-27 interpro_id=IPR003447 interpro_description=Methicillin resistance protein GO=Biological Process: peptidoglycan biosynthetic process (GO:0009252))
ACD65_34_5
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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comp(2928..3359)
DNA (432bp) protein (144aa)
Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NWA6_9DELT (db=UNIREF evalue=3.0e-10 bit_score=67.4 identity=46.43 coverage=49.3055555555556)
response regulator receiver protein (db=KEGG evalue=2.0e-09 bit_score=64.3 identity=32.59 coverage=79.8611111111111)
CheY-like (db=superfamily db_id=SSF52172 from=6 to=141 evalue=2.5e-16 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=2 to=141 evalue=1.1e-12)
ACD65_34_6
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

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3487..5610
DNA (2124bp) protein (708aa)
secreted protein with C-terminal beta-propeller domain
secreted protein with C-terminal beta-propeller domain
Putative uncharacterized protein n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W1H6_UNCMA (db=UNIREF evalue=1.0e-81 bit_score=308.0 identity=44.31 coverage=53.8135593220339)
seg (db=Seg db_id=seg from=27 to=40)
ACD65_34_7
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

5558..5974
DNA (417bp) protein (139aa)
hypothetical protein
seg (db=Seg db_id=seg from=45 to=58)
seg (db=Seg db_id=seg from=59 to=70)
Beta_propel (db=HMMPfam db_id=PF09826 from=2 to=130 evalue=5.2e-29 interpro_id=IPR019198 interpro_description=Beta propeller domain)
Displaying 7 items

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