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ACD65_143

Alias: ACD65_50738.3096.5

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD65_143_1

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comp(3..212)
DNA (210bp) protein (70aa)
rpsC; 30S ribosomal protein S3
Prokaryotic type KH domain (KH-domain type II) (db=superfamily db_id=SSF54814 from=2 to=69 evalue=2.7e-20 interpro_id=IPR009019 interpro_description=K Homology, prokaryotic type GO=Molecular Function: RNA binding (GO:0003723))
Ribosomal_S3_N (db=HMMPfam db_id=PF00417 from=1 to=61 evalue=1.2e-18 interpro_id=IPR008282 interpro_description=Ribosomal protein S3, N-terminal GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.300.20 from=17 to=70 evalue=2.1e-10 interpro_id=IPR015946 interpro_description=K homology-like, alpha/beta)
ACD65_143_2

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comp(234..662)
DNA (429bp) protein (143aa)
rplV; 50S ribosomal protein L22
seg (db=Seg db_id=seg from=119 to=137)
rplV_bact: ribosomal protein L22 (db=HMMTigr db_id=TIGR01044 from=3 to=105 evalue=9.8e-43 interpro_id=IPR005727 interpro_description=Ribosomal protein L22, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal_L22 (db=HMMPfam db_id=PF00237 from=3 to=106 evalue=7.2e-35 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD65_143_3

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comp(677..973)
DNA (297bp) protein (99aa)
30S ribosomal protein S19
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=51 to=75 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
rpsS_bact: ribosomal protein S19 (db=HMMTigr db_id=TIGR01050 from=1 to=88 evalue=6.4e-52 interpro_id=IPR005732 interpro_description=Ribosomal protein S19, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
RIBOSOMAL PROTEIN S19P FAMILY MEMBER (db=HMMPanther db_id=PTHR11880 from=1 to=93 evalue=3.0e-41 interpro_id=IPR002222 interpro_description=Ribosomal protein S19/S15 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD65_143_4

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comp(1034..1885)
DNA (852bp) protein (284aa)
rplB; 50S ribosomal protein L2
50S ribosomal protein L2 n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01CB (db=UNIREF evalue=1.0e-73 bit_score=280.0 identity=54.12 coverage=97.1830985915493)
seg (db=Seg db_id=seg from=53 to=62)
rplB_bact: ribosomal protein L2 (db=HMMTigr db_id=TIGR01171 from=3 to=277 evalue=2.2e-135 interpro_id=IPR005880 interpro_description=Ribosomal protein L2, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934), Molecular Function: transferase activity (GO:0016740))
ACD65_143_5

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comp(1904..2203)
DNA (300bp) protein (100aa)
50S ribosomal protein L25
Ribosomal_L23 (db=HMMPfam db_id=PF00276 from=5 to=93 evalue=2.6e-19 interpro_id=IPR013025 interpro_description=Ribosomal protein L25/L23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal proteins S24e, L23 and L15e (db=superfamily db_id=SSF54189 from=1 to=92 evalue=2.2e-18 interpro_id=IPR012678 interpro_description=Ribosomal protein L23/L15e, core GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.70.330 from=2 to=97 evalue=1.8e-17 interpro_id=IPR012677 interpro_description=Nucleotide-binding, alpha-beta plait GO=Molecular Function: nucleotide binding (GO:0000166))
ACD65_143_6
CG_PER_02, Peregrinibacteria, Bacteria

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comp(2208..2891)
DNA (684bp) protein (228aa)
rplD; 50S ribosomal protein L4
seg (db=Seg db_id=seg from=41 to=54)
Ribosomal protein L4 (db=superfamily db_id=SSF52166 from=2 to=219 evalue=8.2e-52 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L4 (db=HMMPfam db_id=PF00573 from=17 to=217 evalue=6.5e-51 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD65_143_7

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comp(2919..3128)
DNA (210bp) protein (70aa)
50S ribosomal protein L3
50S RIBOSOMAL PROTEIN L3 (db=HMMPanther db_id=PTHR11229 from=1 to=66 evalue=4.1e-25)
Translation proteins (db=superfamily db_id=SSF50447 from=1 to=66 evalue=8.1e-23 interpro_id=IPR009000 interpro_description=Translation elongation/initiation factor/Ribosomal, beta-barrel)
Ribosomal_L3 (db=HMMPfam db_id=PF00297 from=2 to=66 evalue=3.2e-14 interpro_id=IPR000597 interpro_description=Ribosomal protein L3 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying 7 items

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