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ACD66_138

Alias: ACD66_101875.5165.6

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD66_138_1
GWB1_OD1_41_7, Uhrbacteria, Parcubacteria, Bacteria

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comp(68..877)
DNA (810bp) protein (270aa)
preprotein translocase subunit SecY
seg (db=Seg db_id=seg from=109 to=122)
seg (db=Seg db_id=seg from=62 to=72)
seg (db=Seg db_id=seg from=21 to=35)
ACD66_138_2
GWF2_OD1_41_40, Uhrbacteria, Parcubacteria, Bacteria

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comp(1379..1819)
DNA (441bp) protein (147aa)
rplO; 50S ribosomal protein L15
seg (db=Seg db_id=seg from=118 to=132)
seg (db=Seg db_id=seg from=17 to=30)
RIBOSOMAL_L15 (db=PatternScan db_id=PS00475 from=111 to=141 evalue=0.0 interpro_id=IPR001196 interpro_description=Ribosomal protein L15, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD66_138_3
GWD2_OD1_41_121, Uhrbacteria, Parcubacteria, Bacteria

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comp(1825..2259)
DNA (435bp) protein (145aa)
hypothetical protein
seg (db=Seg db_id=seg from=121 to=139)
30S RIBOSOMAL PROTEIN S5 (db=HMMPanther db_id=PTHR13718:SF2 from=1 to=122 evalue=9.3e-39)
RIBOSOMAL S SUBUNIT (db=HMMPanther db_id=PTHR13718 from=1 to=122 evalue=9.3e-39 interpro_id=IPR000851 interpro_description=Ribosomal protein S5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD66_138_4
GWD2_OD1_41_121, Uhrbacteria, Parcubacteria, Bacteria

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comp(2814..3413)
DNA (600bp) protein (200aa)
rplF; 50S ribosomal protein L6
50S ribosomal protein L6 n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI0001978A1C (db=UNIREF evalue=1.0e-43 bit_score=179.0 identity=47.75 coverage=88.0)
L6_bact: ribosomal protein L6 (db=HMMTigr db_id=TIGR03654 from=21 to=195 evalue=1.4e-85 interpro_id=IPR019906 interpro_description=Ribosomal protein L6, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
60S/50S RIBOSOMAL PROTEIN L6/L9 (db=HMMPanther db_id=PTHR11655 from=21 to=197 evalue=1.9e-67 interpro_id=IPR000702 interpro_description=Ribosomal protein L6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD66_138_5
GWF2_OD1_41_430, Uhrbacteria, Parcubacteria, Bacteria

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comp(3358..3747)
DNA (390bp) protein (130aa)
30S ribosomal protein S8
RIBOSOMAL_S8 (db=PatternScan db_id=PS00053 from=99 to=116 evalue=0.0 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S8 (db=HMMPfam db_id=PF00410 from=3 to=129 evalue=3.4e-44 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S8 (db=HMMPanther db_id=PTHR11758 from=1 to=129 evalue=3.7e-43 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD66_138_6
GWF2_OD1_41_430, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists


comp(3942..4487)
DNA (546bp) protein (182aa)
rplE; 50S ribosomal protein L5
RIBOSOMAL_L5 (db=PatternScan db_id=PS00358 from=56 to=72 evalue=0.0 interpro_id=IPR020929 interpro_description=Ribosomal protein L5, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
60S RIBOSOMAL PROTEIN L11-RELATED (db=HMMPanther db_id=PTHR11994 from=1 to=181 evalue=2.4e-74 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L5 (db=HMMPanther db_id=PTHR11994:SF4 from=1 to=181 evalue=2.4e-74)
ACD66_138_7
GWF2_OD1_41_430, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists


comp(4489..4806)
DNA (318bp) protein (106aa)
rplX; 50S ribosomal protein L24
50S ribosomal protein L24 n=3 Tax=Bacteria RepID=B0N492_9FIRM (db=UNIREF evalue=6.0e-14 bit_score=79.7 identity=48.45 coverage=87.7358490566038)
MITOCHONDRIAL RIBOSOMAL PROTEIN L24 (db=HMMPanther db_id=PTHR12903 from=1 to=96 evalue=4.2e-20 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Translation proteins SH3-like domain (db=superfamily db_id=SSF50104 from=2 to=101 evalue=1.6e-19 interpro_id=IPR008991 interpro_description=Translation protein SH3-like)
ACD66_138_8
GWD2_OD1_41_121, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists


comp(4814..5185)
DNA (372bp) protein (124aa)
50S ribosomal protein L14
50S ribosomal protein L14 n=6 Tax=Fusobacterium RepID=C6JHW4_FUSVA (db=UNIREF evalue=8.0e-36 bit_score=152.0 identity=68.29 coverage=97.5806451612903)
seg (db=Seg db_id=seg from=49 to=63)
rplN_bact: ribosomal protein L14 (db=HMMTigr db_id=TIGR01067 from=1 to=123 evalue=1.6e-72 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Displaying 8 items

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