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ACD76_21

Alias: ACD76_9609.25822.18

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD76_21_1

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comp(87..1217)
DNA (1131bp) protein (377aa)
yerB; putative lipoprotein YerB precursor
seg (db=Seg db_id=seg from=165 to=179)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=50)
seg (db=Seg db_id=seg from=28 to=52)
ACD76_21_2

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comp(1228..1911)
DNA (684bp) protein (228aa)
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
seg (db=Seg db_id=seg from=180 to=227)
Ribosomal protein L25-like (db=superfamily db_id=SSF50715 from=1 to=189 evalue=1.1e-42 interpro_id=IPR011035 interpro_description=Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO=Biological Process: translation (GO:0006412))
ctc_TL5: ribosomal protein L25, Ctc-form (db=HMMTigr db_id=TIGR00731 from=3 to=180 evalue=4.4e-36 interpro_id=IPR001021 interpro_description=Ribosomal protein L25 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: 5S rRNA binding (GO:0008097))
ACD76_21_3

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comp(1996..3162)
DNA (1167bp) protein (389aa)
rodA; rod shape-determining protein roda
Rod shape-determining protein RodA n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JW32_9GAMM (db=UNIREF evalue=3.0e-52 bit_score=209.0 identity=42.59 coverage=82.5192802056555)
transmembrane_regions (db=TMHMM db_id=tmhmm from=302 to=324)
transmembrane_regions (db=TMHMM db_id=tmhmm from=339 to=361)
ACD76_21_4

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comp(3195..4127)
DNA (933bp) protein (311aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=35 to=57)
Uncharacterized protein {ECO:0000313|EMBL:EKD32705.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_21_5

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4219..6273
DNA (2055bp) protein (685aa)
DNA gyrase subunit B n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDG8_THET1 (db=UNIREF evalue=0.0 bit_score=758.0 identity=59.76 coverage=91.970802919708)
gyrB; DNA gyrase subunit B
gyrB; DNA gyrase subunit B
seg (db=Seg db_id=seg from=584 to=597)
ACD76_21_6

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6738..6995
DNA (258bp) protein (86aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=25 to=47)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=21)
Uncharacterized protein {ECO:0000313|EMBL:EKD32707.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_21_7

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7075..7296
DNA (222bp) protein (74aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=38 to=60)
SecE (db=HMMPfam db_id=PF00584 from=13 to=67 evalue=1.4e-16 interpro_id=IPR001901 interpro_description=Protein secE/sec61-gamma protein GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
secE_bact: preprotein translocase, SecE sub (db=HMMTigr db_id=TIGR00964 from=13 to=69 evalue=6.4e-16 interpro_id=IPR005807 interpro_description=SecE subunit of protein translocation complex GO=Biological Process: protein secretion (GO:0009306), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: integral to membrane (GO:0016021))
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_21_8

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7305..7850
DNA (546bp) protein (182aa)
nusG; transcription antitermination factor
seg (db=Seg db_id=seg from=47 to=66)
NUSG (db=PatternScan db_id=PS01014 from=164 to=173 evalue=0.0 interpro_id=IPR015869 interpro_description=Transcription antitermination protein, NusG, bacteria, conserved site)
nusG: transcription termination/antiterminat (db=HMMTigr db_id=TIGR00922 from=12 to=181 evalue=5.6e-81 interpro_id=IPR001062 interpro_description=Transcription antitermination protein, NusG GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD76_21_9

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7863..8288
DNA (426bp) protein (142aa)
rplK; 50S ribosomal protein L11
seg (db=Seg db_id=seg from=14 to=29)
RIBOSOMAL_L11 (db=PatternScan db_id=PS00359 from=126 to=141 evalue=0.0 interpro_id=IPR020785 interpro_description=Ribosomal protein L11, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L11_bact: ribosomal protein L11 (db=HMMTigr db_id=TIGR01632 from=3 to=141 evalue=9.2e-77 interpro_id=IPR006519 interpro_description=Ribosomal protein L11, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD76_21_10

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8340..9023
DNA (684bp) protein (228aa)
rplA; 50S ribosomal protein L1
seg (db=Seg db_id=seg from=85 to=101)
RIBOSOMAL_L1 (db=PatternScan db_id=PS01199 from=121 to=139 evalue=0.0 interpro_id=IPR002143 interpro_description=Ribosomal protein L1 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))
rplA_bact: ribosomal protein L1 (db=HMMTigr db_id=TIGR01169 from=2 to=226 evalue=2.5e-106 interpro_id=IPR005878 interpro_description=Ribosomal protein L1, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
ACD76_21_11

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9126..9632
DNA (507bp) protein (169aa)
Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R8E2_9FIRM (db=UNIREF evalue=8.0e-49 bit_score=195.0 identity=63.64 coverage=84.0236686390533)
deoxycytidylate deaminase
CYT_DCMP_DEAMINASES (db=PatternScan db_id=PS00903 from=80 to=112 evalue=0.0 interpro_id=IPR016192 interpro_description=APOBEC/CMP deaminase, zinc-binding GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity (GO:0016787))
DEOXYCYTIDYLATE DEAMINASE-RELATED (db=HMMPanther db_id=PTHR11086 from=4 to=155 evalue=5.9e-56 interpro_id=IPR015517 interpro_description=Cytidine deaminase)
ACD76_21_12

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9665..10027
DNA (363bp) protein (121aa)
S23 ribosomal protein
seg (db=Seg db_id=seg from=58 to=67)
Ribosomal_S23p (db=HMMPfam db_id=PF05635 from=7 to=115 evalue=1.1e-35 interpro_id=IPR008815 interpro_description=23S rRNA-associated protein)
Uncharacterized protein {ECO:0000313|EMBL:EKD32713.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_21_13

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10063..10644
DNA (582bp) protein (194aa)
hypothetical protein
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=5 to=189 evalue=9.6e-18)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=189 evalue=3.1e-05)
Uncharacterized protein {ECO:0000313|EMBL:EKD32714.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_21_14

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comp(10664..11047)
DNA (384bp) protein (128aa)
doc; doc (death on cure) protein of bacteriophage P1
DOC_P1: death-on-curing family protein (db=HMMTigr db_id=TIGR01550 from=3 to=122 evalue=5.7e-19 interpro_id=IPR006440 interpro_description=Death-on-curing protein)
Fic (db=HMMPfam db_id=PF02661 from=4 to=83 evalue=3.0e-11 interpro_id=IPR003812 interpro_description=Filamentation induced by cAMP/death on curing, related)
FIDO (db=ProfileScan db_id=PS51459 from=4 to=122 evalue=13.068)
ACD76_21_15

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comp(11050..11379)
DNA (330bp) protein (110aa)
AbrB/MazE/MraZ-like (db=superfamily db_id=SSF89447 from=34 to=81 evalue=1.4e-09)
SpoVT_AbrB (db=HMMPfam db_id=PF04014 from=40 to=71 evalue=2.0e-07 interpro_id=IPR007159 interpro_description=Transcription regulator AbrB/SpoV, predicted)
Uncharacterized protein {ECO:0000313|EMBL:EKD32716.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_21_16

Not on your lists

11414..12286
DNA (873bp) protein (291aa)
thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase/dCMP hydroxymethylase (db=superfamily db_id=SSF55831 from=1 to=290 evalue=9.7e-107 interpro_id=IPR000398 interpro_description=Thymidylate synthase GO=Molecular Function: thymidylate synthase activity (GO:0004799), Biological Process: dTMP biosynthetic process (GO:0006231))
no description (db=Gene3D db_id=G3DSA:3.30.572.10 from=2 to=290 evalue=3.0e-94 interpro_id=IPR000398 interpro_description=Thymidylate synthase GO=Molecular Function: thymidylate synthase activity (GO:0004799), Biological Process: dTMP biosynthetic process (GO:0006231))
Thymidylat_synt (db=HMMPfam db_id=PF00303 from=2 to=290 evalue=7.5e-94 interpro_id=IPR000398 interpro_description=Thymidylate synthase GO=Molecular Function: thymidylate synthase activity (GO:0004799), Biological Process: dTMP biosynthetic process (GO:0006231))
ACD76_21_17

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12295..12768
DNA (474bp) protein (158aa)
folA; dihydrofolate reductase
DHFR_1 (db=PatternScan db_id=PS00075 from=13 to=35 evalue=0.0 interpro_id=IPR017925 interpro_description=Dihydrofolate reductase conserved site)
Dihydrofolate reductase-like (db=superfamily db_id=SSF53597 from=1 to=157 evalue=1.6e-60)
DHFR_1 (db=HMMPfam db_id=PF00186 from=1 to=156 evalue=2.9e-54 interpro_id=IPR001796 interpro_description=Dihydrofolate reductase domain GO=Molecular Function: dihydrofolate reductase activity (GO:0004146), Biological Process: glycine biosynthetic process (GO:0006545), Biological Process: nucleotide biosynthetic process (GO:0009165))
ACD76_21_18

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12778..13203
DNA (426bp) protein (142aa)
dut2; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (EC:3.6.1.23)
dUTPase-like (db=superfamily db_id=SSF51283 from=1 to=141 evalue=6.8e-33)
no description (db=Gene3D db_id=G3DSA:2.70.40.10 from=1 to=141 evalue=2.2e-31)
DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE (db=HMMPanther db_id=PTHR11241 from=5 to=141 evalue=3.0e-30)
ACD76_21_19

Not on your lists

13249..14010
DNA (762bp) protein (254aa)
dTMP kinase (EC:2.7.4.9)
seg (db=Seg db_id=seg from=4 to=21)
seg (db=Seg db_id=seg from=232 to=239)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=243 evalue=1.6e-30)
ACD76_21_20

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13976..14797
DNA (822bp) protein (274aa)
seg (db=Seg db_id=seg from=166 to=185)
seg (db=Seg db_id=seg from=152 to=163)
seg (db=Seg db_id=seg from=18 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=244 to=266)
ACD76_21_21

Not on your lists

14802..15518
DNA (717bp) protein (239aa)
seg (db=Seg db_id=seg from=178 to=190)
seg (db=Seg db_id=seg from=60 to=74)
transmembrane_regions (db=TMHMM db_id=tmhmm from=208 to=230)
transmembrane_regions (db=TMHMM db_id=tmhmm from=166 to=188)
ACD76_21_22

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15515..17020
DNA (1506bp) protein (502aa)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Aquifex aeolicus RepID=GATB_AQUAE (db=UNIREF evalue=9.0e-117 bit_score=424.0 identity=46.0 coverage=93.8247011952191)
seg (db=Seg db_id=seg from=445 to=457)
ACD76_21_23

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comp(17136..18044)
DNA (909bp) protein (303aa)
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase
miaA: tRNA delta(2)-isopentenylpyrophosphate (db=HMMTigr db_id=TIGR00174 from=7 to=287 evalue=4.2e-85 interpro_id=IPR018022 interpro_description=tRNA delta(2)-isopentenylpyrophosphate transferase)
TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE-RELATED (db=HMMPanther db_id=PTHR11088 from=38 to=281 evalue=1.5e-81 interpro_id=IPR002627 interpro_description=tRNA isopentenyltransferase GO=Molecular Function: tRNA isopentenyltransferase activity (GO:0004811), Molecular Function: ATP binding (GO:0005524), Biological Process: tRNA processing (GO:0008033))
TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE (db=HMMPanther db_id=PTHR11088:SF21 from=38 to=281 evalue=1.5e-81)
ACD76_21_24

Not on your lists

18087..18641
DNA (555bp) protein (185aa)
NUDIX hydrolase n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHP0_9EURY (db=UNIREF evalue=8.0e-34 bit_score=146.0 identity=44.08 coverage=81.6216216216216)
hypothetical protein; K01515 ADP-ribose pyrophosphatase [EC:3.6.1.13] (db=KEGG evalue=2.0e-11 bit_score=72.0 identity=29.05 coverage=77.2972972972973)
seg (db=Seg db_id=seg from=164 to=183)
Nudix (db=superfamily db_id=SSF55811 from=1 to=174 evalue=1.4e-20 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
ACD76_21_25

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19040..19603
DNA (564bp) protein (188aa)
prx-1; peroxiredoxin (EC:1.11.1.15)
ALKYL HYDROPEROXIDE REDUCTASE, SUBUNIT C (db=HMMPanther db_id=PTHR10681:SF7 from=1 to=180 evalue=1.0e-102)
PEROXIREDOXIN (db=HMMPanther db_id=PTHR10681 from=1 to=180 evalue=1.0e-102)
AhpC: peroxiredoxin (db=HMMTigr db_id=TIGR03137 from=1 to=187 evalue=6.1e-93 interpro_id=IPR017559 interpro_description=Peroxiredoxin GO=Molecular Function: peroxiredoxin activity (GO:0051920), Biological Process: oxidation reduction (GO:0055114))
ACD76_21_26

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19757..20350
DNA (594bp) protein (198aa)
Superoxide dismutase (EC:1.15.1.1)
Superoxide dismutase n=1 Tax=NC10 bacterium 'Dutch sediment' RepID=D5MJB4_9BACT (db=UNIREF evalue=6.0e-59 bit_score=229.0 identity=57.58 coverage=96.4646464646465)
Superoxide dismutase, Mn/Fe specific (db=HMMPIR db_id=PIRSF000349 from=1 to=197 evalue=3.4e-32 interpro_id=IPR001189 interpro_description=Manganese/iron superoxide dismutase GO=Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolic process (GO:0006801), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation reduction (GO:0055114))
Fe,Mn superoxide dismutase (SOD), C-terminal domain (db=superfamily db_id=SSF54719 from=82 to=196 evalue=4.7e-26 interpro_id=IPR019832 interpro_description=Manganese/iron superoxide dismutase, C-terminal GO=Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolic process (GO:0006801), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation reduction (GO:0055114))
ACD76_21_27

Not on your lists

20378..21079
DNA (702bp) protein (234aa)
oxidoreductase FAD/NAD(P)-binding domain-containing protein
Ferredoxin reductase-like, C-terminal NADP-linked domain (db=superfamily db_id=SSF52343 from=92 to=227 evalue=3.6e-31)
no description (db=Gene3D db_id=G3DSA:3.40.50.80 from=101 to=229 evalue=3.3e-21)
Riboflavin synthase domain-like (db=superfamily db_id=SSF63380 from=2 to=103 evalue=3.5e-17 interpro_id=IPR017938 interpro_description=Riboflavin synthase-like beta-barrel)
ACD76_21_28

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21219..22613
DNA (1395bp) protein (465aa)
Trypanothione synthetase domain protein n=1 Tax=Prevotella sp. oral taxon 472 str. F0295 RepID=C9Q042_9BACT (db=UNIREF evalue=2.0e-08 bit_score=64.3 identity=29.32 coverage=26.4516129032258)
CHAP domain-containing protein (db=KEGG evalue=3.0e-07 bit_score=60.5 identity=30.37 coverage=26.6666666666667)
seg (db=Seg db_id=seg from=11 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
ACD76_21_29

Not on your lists

22718..23026
DNA (309bp) protein (103aa)
22718..23026 + (rbs_motif=TAAT rbs_spacer=6bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD32700.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_21_30

Not on your lists

23122..23715
DNA (594bp) protein (198aa)
23122..23715 + (rbs_motif=AAAAA rbs_spacer=9bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD32701.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying items 1-30 of 32 in total

View Taxonomy