ggKbase home page

ACD76_37

Alias: ACD76_39776.11882.18

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD76_37_1

Not on your lists

comp(2..238)
DNA (237bp) protein (79aa)
2..238 - (rbs_motif=TAA rbs_spacer=14bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD32938.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_37_2

Not on your lists

comp(379..627)
DNA (249bp) protein (83aa)
transglycosylase
seg (db=Seg db_id=seg from=28 to=44)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=50)
ACD76_37_3

Not on your lists

832..1008
DNA (177bp) protein (59aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=37 to=56)
seg (db=Seg db_id=seg from=35 to=49)
Uncharacterized protein {ECO:0000313|EMBL:EKD32940.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_37_4

Not on your lists

1023..1802
DNA (780bp) protein (260aa)
seg (db=Seg db_id=seg from=76 to=89)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Hedgehog/intein (Hint) domain (db=superfamily db_id=SSF51294 from=127 to=198 evalue=3.3e-11)
INTEIN_N_TER (db=ProfileScan db_id=PS50817 from=127 to=201 evalue=7.987 interpro_id=IPR006141 interpro_description=Intein splice site GO=Biological Process: intein-mediated protein splicing (GO:0016539))
ACD76_37_5

Not on your lists

1817..3058
DNA (1242bp) protein (414aa)
conserved hypothetical protein TIGR00275
seg (db=Seg db_id=seg from=4 to=12)
TIGR00275: flavoprotein, HI0933 family (db=HMMTigr db_id=TIGR00275 from=3 to=407 evalue=1.1e-125 interpro_id=IPR004792 interpro_description=Conserved hypothetical protein CHP00275, flavoprotein HI0933-like)
HI0933_like (db=HMMPfam db_id=PF03486 from=2 to=407 evalue=1.1e-115 interpro_id=IPR004792 interpro_description=Conserved hypothetical protein CHP00275, flavoprotein HI0933-like)
ACD76_37_6

Not on your lists

3062..3610
DNA (549bp) protein (183aa)
Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FTP8_9CLOT (db=UNIREF evalue=9.0e-33 bit_score=142.0 identity=41.82 coverage=87.9781420765027)
hypothetical protein
DUF45 (db=HMMPfam db_id=PF01863 from=79 to=177 evalue=5.9e-35 interpro_id=IPR002725 interpro_description=Protein of unknown function DUF45)
DUF45 (db=HMMPfam db_id=PF01863 from=16 to=65 evalue=6.0e-06 interpro_id=IPR002725 interpro_description=Protein of unknown function DUF45)
ACD76_37_7

Not on your lists

comp(3821..5257)
DNA (1437bp) protein (479aa)
seg (db=Seg db_id=seg from=397 to=412)
seg (db=Seg db_id=seg from=285 to=294)
seg (db=Seg db_id=seg from=63 to=75)
seg (db=Seg db_id=seg from=28 to=54)
ACD76_37_8

Not on your lists

comp(5332..5835)
DNA (504bp) protein (168aa)
seg (db=Seg db_id=seg from=19 to=40)
seg (db=Seg db_id=seg from=142 to=167)
Uncharacterized protein {ECO:0000313|EMBL:EKD32945.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
ACD76_37_9

Not on your lists

comp(5843..7300)
DNA (1458bp) protein (486aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AZ64_RUMGN (db=UNIREF evalue=2.0e-52 bit_score=210.0 identity=32.16 coverage=94.4444444444444)
coiled-coil (db=Coil db_id=coil from=250 to=278 evalue=NA)
ATP-BINDING TRANSPORT PROTEIN-RELATED (db=HMMPanther db_id=PTHR19211 from=99 to=472 evalue=6.1e-76)
ACD76_37_10

Not on your lists

7446..8393
DNA (948bp) protein (316aa)
seg (db=Seg db_id=seg from=252 to=269)
seg (db=Seg db_id=seg from=108 to=125)
seg (db=Seg db_id=seg from=58 to=76)
transmembrane_regions (db=TMHMM db_id=tmhmm from=252 to=274)
ACD76_37_11

Not on your lists

8550..9269
DNA (720bp) protein (240aa)
hypothetical protein
seg (db=Seg db_id=seg from=29 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=222 to=231)
ACD76_37_12

Not on your lists

9619..9963
DNA (345bp) protein (115aa)
9619..9963 + (rbs_motif=ATA rbs_spacer=7bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD32949.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_37_13

Not on your lists

10618..10815
DNA (198bp) protein (66aa)
hypothetical protein
Probable cold shock protein scoF n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQQ8_9PLAN (db=UNIREF evalue=2.0e-11 bit_score=71.2 identity=61.67 coverage=87.8787878787879)
COLD_SHOCK (db=PatternScan db_id=PS00352 from=13 to=32 evalue=0.0 interpro_id=IPR019844 interpro_description=Cold-shock conserved site)
CSD (db=HMMPfam db_id=PF00313 from=1 to=64 evalue=2.2e-21 interpro_id=IPR002059 interpro_description=Cold-shock protein, DNA-binding GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD76_37_14

Not on your lists

10957..11481
DNA (525bp) protein (175aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=57 to=79)
transmembrane_regions (db=TMHMM db_id=tmhmm from=118 to=140)
transmembrane_regions (db=TMHMM db_id=tmhmm from=153 to=170)
ACD76_37_15

Not on your lists

11602..11868
DNA (267bp) protein (89aa)
putative excinuclease ABC, C subunit, N-terminal
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYU0_9BACT (db=UNIREF evalue=1.0e-21 bit_score=105.0 identity=58.14 coverage=95.5056179775281)
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=1 to=83 evalue=7.1e-15 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG (db=HMMPfam db_id=PF01541 from=3 to=66 evalue=1.1e-08 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
Displaying 15 items

View Taxonomy