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ACD83_103

Alias: ACD83_328971.2912.6

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD83_103_1
GWA2_Berkelbacteria_38_9, Berkelbacteria, Bacteria

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comp(3..347)
DNA (345bp) protein (115aa)
coiled-coil (db=Coil db_id=coil from=80 to=101 evalue=NA)
seg (db=Seg db_id=seg from=52 to=66)
Peptide chain release factor 1 Tax=GWA2_Berkelbacteria_38_9
ACD83_103_2

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comp(425..715)
DNA (291bp) protein (97aa)
50S ribosomal protein L31
50S ribosomal protein L31 n=1 Tax=Nitrosococcus halophilus Nc4 RepID=D5C3K0_NITHN (db=UNIREF evalue=2.0e-16 bit_score=88.2 identity=55.38 coverage=65.979381443299)
L31: ribosomal protein L31 (db=HMMTigr db_id=TIGR00105 from=1 to=67 evalue=3.4e-29 interpro_id=IPR002150 interpro_description=Ribosomal protein L31 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L31 (db=HMMPfam db_id=PF01197 from=1 to=64 evalue=5.2e-25 interpro_id=IPR002150 interpro_description=Ribosomal protein L31 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD83_103_3

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976..1722
DNA (747bp) protein (249aa)
30S ribosomal protein S2 n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWS9_9GAMM (db=UNIREF evalue=3.0e-58 bit_score=228.0 identity=45.13 coverage=90.3614457831325)
30S ribosomal protein S2
coiled-coil (db=Coil db_id=coil from=129 to=150 evalue=NA)
RIBOSOMAL_S2_1 (db=PatternScan db_id=PS00962 from=8 to=19 evalue=0.0 interpro_id=IPR018130 interpro_description=Ribosomal protein S2, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD83_103_4
GWA2_Berkelbacteria_38_9, Berkelbacteria, Bacteria

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1751..2203
DNA (453bp) protein (151aa)
Translation elongation factor EFTs/EF1B dimerization
EF_TS_2 (db=PatternScan db_id=PS01127 from=74 to=84 evalue=0.0 interpro_id=IPR018101 interpro_description=Translation elongation factor Ts, conserved site GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
ELONGATION FACTOR TS (db=HMMPanther db_id=PTHR11741 from=5 to=146 evalue=5.8e-32 interpro_id=IPR001816 interpro_description=Translation elongation factor EFTs/EF1B GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
Elongation factor Ts (EF-Ts), dimerisation domain (db=superfamily db_id=SSF54713 from=52 to=150 evalue=2.0e-31 interpro_id=IPR014039 interpro_description=Translation elongation factor EFTs/EF1B, dimerisation GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
ACD83_103_5

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2237..2794
DNA (558bp) protein (186aa)
ribosome recycling factor
RIBOSOME RECYCLING FACTOR (db=HMMPanther db_id=PTHR20982 from=1 to=185 evalue=1.2e-62 interpro_id=IPR002661 interpro_description=Ribosome recycling factor GO=Biological Process: translation (GO:0006412))
RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF) (db=HMMPanther db_id=PTHR20982:SF3 from=1 to=185 evalue=1.2e-62 interpro_id=IPR015998 interpro_description=Ribosome recycling factor, bacterial-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: translational termination (GO:0006415))
frr: ribosome recycling factor (db=HMMTigr db_id=TIGR00496 from=10 to=185 evalue=4.8e-60 interpro_id=IPR002661 interpro_description=Ribosome recycling factor GO=Biological Process: translation (GO:0006412))
ACD83_103_6
GWA2_Berkelbacteria_38_9, Berkelbacteria, Bacteria

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2794..2946
DNA (153bp) protein (51aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=45)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
seg (db=Seg db_id=seg from=32 to=44)
seg (db=Seg db_id=seg from=9 to=24)
Displaying 6 items

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